RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 C22orf23Q9BZE7 217 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 ZMAT3Q9HA38 289 aaKnown RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 PNPOQ9NVS9 261 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 STAP2Q9UGK3 403 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 AJAP1Q9UKB5 411 aaPredicted RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 PHGDHO43175 533 aaKnown RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 HOXA3O43365 443 aaPredicted RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 FRS3O43559 492 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 AMY1AP04745 511 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 MYF5P13349 255 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 DDCP20711 480 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 MALP21145 153 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 ACO1P21399 889 aaKnown RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 GUCY1A2P33402 732 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 SELENOPP49908 381 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 ALDH5A1P51649 535 aaPredicted RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 PTH1RQ03431 593 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 TLE1Q04724 770 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 DUSP8Q13202 625 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 PLS1Q14651 629 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 ICAM4Q14773 271 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 SPATS1Q496A3 300 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 XRRA1Q6P2D8 792 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 ZNF585AQ6P3V2 769 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 TSHZ1Q6ZSZ6 1077 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 FAM83AQ86UY5 434 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 COL23A1Q86Y22 540 aaPredicted RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 TRMT2AQ8IZ69 625 aaKnown RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 ZGPATQ8N5A5 531 aaKnown RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 SH2D3CQ8N5H7 860 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 LILRA3Q8N6C8 439 aaPredicted RBP5.74□□□□□ -1.49
VPS54-204ENST00000416400 ACRBPQ8NEB7 543 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 MDM1Q8TC05 714 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 PGBD4Q96DM1 585 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 C8orf49Q96NF6 230 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 ADOQ96SZ5 270 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 TBCBQ99426 244 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 LRRC27Q9C0I9 530 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 BTBD1Q9H0C5 482 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 WDCPQ9H6R7 721 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 LDAHQ9H6V9 325 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 TPCN1Q9ULQ1 816 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 CLCA2Q9UQC9 943 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 DMTF1Q9Y222 760 aa5.74□□□□□ -1.49
VPS54-204ENST00000416400 A0A1W2PPL8 197 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 IL2RBP14784 551 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 SMARCA1P28370 1054 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 HIBADHP31937 336 aaKnown RBP5.73□□□□□ -1.49
VPS54-204ENST00000416400 CRHR2Q13324 411 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 MRPL49Q13405 166 aaKnown RBP5.73□□□□□ -1.49
VPS54-204ENST00000416400 APBB1IPQ7Z5R6 666 aaPredicted RBP5.73□□□□□ -1.49
VPS54-204ENST00000416400 DNERQ8NFT8 737 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 FBXO18Q8NFZ0 1043 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 CASKIN2Q8WXE0 1202 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 MIEF2Q96C03 454 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 APIPQ96GX9 242 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 CPPED1Q9BRF8 314 aaPredicted RBP5.73□□□□□ -1.49
VPS54-204ENST00000416400 ATP6V0A4Q9HBG4 840 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 SARS2Q9NP81 518 aaKnown RBP5.73□□□□□ -1.49
VPS54-204ENST00000416400 PLCB1Q9NQ66 1216 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 CNNM1Q9NRU3 951 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 MOCS1Q9NZB8 636 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 SH3BP1Q9Y3L3 701 aa5.73□□□□□ -1.49
VPS54-204ENST00000416400 RHPN2P1A8MT19 583 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 PRR5-ARHGAP8B1AHC4 643 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 MUSKO15146 869 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 TEX33O43247 280 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 FTH1P19P0C7X4 201 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 ZKSCAN1P17029 563 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 MAGEA10P43363 369 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 CTXN1P60606 82 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 ATP8B2P98198 1209 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 SP140Q13342 867 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 SNAPC2Q13487 334 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 MTM1Q13496 603 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 PRKD1Q15139 912 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 ATP2B3Q16720 1220 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 GRAMD1BQ3KR37 738 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 PRAMEF14Q5SWL7 426 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 PRRT2Q7Z6L0 340 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 ENAHQ8N8S7 591 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 VPS37AQ8NEZ2 397 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 REPS2Q8NFH8 660 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 IL31RAQ8NI17 732 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 BRIX1Q8TDN6 353 aaKnown RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 ST8SIA2Q92186 375 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 DVL3Q92997 716 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 BORCS6Q96GS4 357 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 CCDC138Q96M89 665 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 KLC2Q9H0B6 622 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 RSAD1Q9HA92 442 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 HECAQ9UBI9 543 aaPredicted RBP5.72□□□□□ -1.49
VPS54-204ENST00000416400 CORO2BQ9UQ03 480 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 SNX13Q9Y5W8 968 aa5.72□□□□□ -1.49
VPS54-204ENST00000416400 B5MCH6 92 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 RASA4BC9J798 803 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 RASA4O43374 803 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 FOSP01100 380 aaPredicted RBP5.71□□□□□ -1.5
VPS54-204ENST00000416400 SETSIPP0DME0 302 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 RPL17P18621 184 aaKnown RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms