RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 CBWD5Q5RIA9 395 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 TDRD10Q5VZ19 366 aaKnown RBP22.12■■□□□ 1.13
VSX1-203ENST00000409285 BEST2Q8NFU1 509 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 CXorf38Q8TB03 319 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 VPS16Q9H269 839 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 PRO3102Q9H379 93 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 RTN4Q9NQC3 1192 aaKnown RBP22.12■■□□□ 1.13
VSX1-203ENST00000409285 TBC1D13Q9NVG8 400 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 MIOSQ9NXC5 875 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 ITGA11Q9UKX5 1188 aa22.12■■□□□ 1.13
VSX1-203ENST00000409285 COLQQ9Y215 455 aaPredicted RBP22.12■■□□□ 1.13
VSX1-203ENST00000409285 TSC2P49815 1807 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 UPP2O95045 317 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 IBSPP21815 317 aaPredicted RBP22.11■■□□□ 1.13
VSX1-203ENST00000409285 LRPAP1P30533 357 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 TUSC3Q13454 348 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 FILIP1LQ4L180 1135 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 LMBRD2Q68DH5 695 aaPredicted RBP22.11■■□□□ 1.13
VSX1-203ENST00000409285 TRAPPC11Q7Z392 1133 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 CMTR2Q8IYT2 770 aaKnown RBP22.11■■□□□ 1.13
VSX1-203ENST00000409285 LRRC43Q8N309 656 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 C1orf127Q8N9H9 656 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 TUBGCP4Q9UGJ1 667 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 INPP5FQ9Y2H2 1132 aa22.11■■□□□ 1.13
VSX1-203ENST00000409285 CHD9Q3L8U1 2897 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 POMCP01189 267 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 MYL7Q01449 175 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 CETN1Q12798 172 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 GSE1Q14687 1217 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 C9orf50Q5SZB4 431 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 HERC6Q8IVU3 1022 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 C18orf25Q96B23 403 aaPredicted RBP22.1■■□□□ 1.13
VSX1-203ENST00000409285 UROC1Q96N76 676 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 DPP3Q9NY33 737 aa22.1■■□□□ 1.13
VSX1-203ENST00000409285 ANO9A1A5B4 782 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 ATP2A2P16615 1042 aaKnown RBP22.09■■□□□ 1.13
VSX1-203ENST00000409285 GATMP50440 423 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 UBASH3AP57075 661 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 SOX4Q06945 474 aaPredicted RBP22.09■■□□□ 1.13
VSX1-203ENST00000409285 NR1I3Q14994 352 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 EPC2Q52LR7 807 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 FBXL13Q8NEE6 735 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 RNPC3Q96LT9 517 aaKnown RBP22.09■■□□□ 1.13
VSX1-203ENST00000409285 NAP1L5Q96NT1 182 aaPredicted RBP22.09■■□□□ 1.13
VSX1-203ENST00000409285 GRPEL1Q9HAV7 217 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 SIX4Q9UIU6 781 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 TBKBP1A7MCY6 615 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 CBFA2T2O43439 604 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 TPM3P06753 285 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 RPL9P32969 192 aaKnown RBP22.09■■□□□ 1.13
VSX1-203ENST00000409285 BIRC3Q13489 604 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 SHHQ15465 462 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 FKBP15Q5T1M5 1219 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 ERGIC2Q96RQ1 377 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 IFNKQ9P0W0 207 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 INSL6Q9Y581 213 aa22.09■■□□□ 1.13
VSX1-203ENST00000409285 VNN1O95497 513 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 STAU1O95793 577 aaKnown RBP22.08■■□□□ 1.12
VSX1-203ENST00000409285 TMCO2Q7Z6W1 182 aaPredicted RBP22.08■■□□□ 1.12
VSX1-203ENST00000409285 COLGALT2Q8IYK4 626 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 LRRC52Q8N7C0 313 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 SP7Q8TDD2 431 aaPredicted RBP22.08■■□□□ 1.12
VSX1-203ENST00000409285 TAS1R2Q8TE23 839 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 DDX27Q96GQ7 796 aaKnown RBP22.08■■□□□ 1.12
VSX1-203ENST00000409285 FAM84AQ96KN4 292 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 MMRN2Q9H8L6 949 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 VRTNQ9H8Y1 702 aa22.08■■□□□ 1.12
VSX1-203ENST00000409285 VWA8A3KMH1 1905 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 A0A1W2PPC1 479 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 A0A1W2PQC6 194 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 CARNS1A5YM72 827 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 PIRO00625 290 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 AP5Z1O43299 807 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 ITGB3P05106 788 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 UBXN1Q04323 297 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 RNASELQ05823 741 aaKnown RBP22.07■■□□□ 1.12
VSX1-203ENST00000409285 NCOA4Q13772 614 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 UPP1Q16831 310 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 C9orf57Q5W0N0 161 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 GBP6Q6ZN66 633 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 TDHQ8IZJ6 230 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 LMO3Q8TAP4 145 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 TAF4BQ92750 862 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 YME1L1Q96TA2 773 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 RAD9AQ99638 391 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 TMEM175Q9BSA9 504 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 XPO4Q9C0E2 1151 aaKnown RBP22.07■■□□□ 1.12
VSX1-203ENST00000409285 RAB20Q9NX57 234 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 GCNT4Q9P109 453 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 CHD7Q9P2D1 2997 aa22.07■■□□□ 1.12
VSX1-203ENST00000409285 PES1O00541 588 aaKnown RBP22.06■■□□□ 1.12
VSX1-203ENST00000409285 B4GALT3O60512 393 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 ZC3H11AO75152 810 aaKnown RBP eCLIP22.06■■□□□ 1.12
VSX1-203ENST00000409285 DDHD2O94830 711 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 HLA-DRAP01903 254 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 PAX3P23760 479 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 ATICP31939 592 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 PIK3CAP42336 1068 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 MRE11P49959 708 aa22.06■■□□□ 1.12
VSX1-203ENST00000409285 RBP5P82980 135 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms