RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 UPP1Q16831 310 aa31.76■■■□□ 2.67
USP42-202ENST00000404008 LMBRD2Q68DH5 695 aaPredicted RBP31.76■■■□□ 2.67
USP42-202ENST00000404008 TMEM130Q8N3G9 435 aa31.76■■■□□ 2.67
USP42-202ENST00000404008 CACTINQ8WUQ7 758 aaKnown RBP31.76■■■□□ 2.67
USP42-202ENST00000404008 ZNF576Q9H609 170 aa31.76■■■□□ 2.67
USP42-202ENST00000404008 INTS13Q9NVM9 706 aa31.76■■■□□ 2.67
USP42-202ENST00000404008 FAN1Q9Y2M0 1017 aa31.76■■■□□ 2.67
USP42-202ENST00000404008 LRRIQ3A6PVS8 624 aaPredicted RBP31.75■■■□□ 2.67
USP42-202ENST00000404008 NT5C1B-RDH14C9J2C7 533 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 KRT13P13646 458 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 VAMP7P51809 220 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 GUCY2FP51841 1108 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 DLG4P78352 724 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 SLC39A11Q8N1S5 342 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 OR5B17Q8NGF7 314 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 ENOX1Q8TC92 643 aaKnown RBP31.75■■■□□ 2.67
USP42-202ENST00000404008 RABGGTAQ92696 567 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 FAM84AQ96KN4 292 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 MTMR12Q9C0I1 747 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 NAT10Q9H0A0 1025 aaKnown RBP31.75■■■□□ 2.67
USP42-202ENST00000404008 CERS4Q9HA82 394 aa31.75■■■□□ 2.67
USP42-202ENST00000404008 PRG3Q9Y2Y8 225 aaPredicted RBP31.75■■■□□ 2.67
USP42-202ENST00000404008 RB1P06400 928 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 TNNI1P19237 187 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 LRPAP1P30533 357 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 RPL9P32969 192 aaKnown RBP31.74■■■□□ 2.67
USP42-202ENST00000404008 PPM1AP35813 382 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 TPD52L1Q16890 204 aaPredicted RBP31.74■■■□□ 2.67
USP42-202ENST00000404008 DUOXA2Q1HG44 320 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 FRMD5Q7Z6J6 570 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 USP37Q86T82 979 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 TMEM173Q86WV6 379 aaPredicted RBP31.74■■■□□ 2.67
USP42-202ENST00000404008 DDX27Q96GQ7 796 aaKnown RBP31.74■■■□□ 2.67
USP42-202ENST00000404008 MARCH5Q9NX47 278 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 DPP3Q9NY33 737 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 SPG21Q9NZD8 308 aa31.74■■■□□ 2.67
USP42-202ENST00000404008 ARMCX3Q9UH62 379 aaPredicted RBP31.74■■■□□ 2.67
USP42-202ENST00000404008 F8W810 466 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 GNA14O95837 355 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 TMEM191BP0C7N4 346 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 C1orf220Q5T0J3 134 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 KLHL23Q8NBE8 558 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 FBXO22Q8NEZ5 403 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 BCL7CQ8WUZ0 217 aaPredicted RBP31.73■■■□□ 2.67
USP42-202ENST00000404008 ARNTL2Q8WYA1 636 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 ZNF516Q92618 1163 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 ANKRD36BP1Q96IX9 119 aa31.73■■■□□ 2.67
USP42-202ENST00000404008 TTYH1Q9H313 450 aaPredicted RBP31.73■■■□□ 2.67
USP42-202ENST00000404008 PODXLO00592 558 aa31.72■■■□□ 2.67
USP42-202ENST00000404008 C1orf127Q8N9H9 656 aa31.72■■■□□ 2.67
USP42-202ENST00000404008 IGSF21Q96ID5 467 aa31.72■■■□□ 2.67
USP42-202ENST00000404008 BPIFA3Q9BQP9 254 aa31.72■■■□□ 2.67
USP42-202ENST00000404008 COLEC11Q9BWP8 271 aa31.72■■■□□ 2.67
USP42-202ENST00000404008 THAP9Q9H5L6 903 aa31.72■■■□□ 2.67
USP42-202ENST00000404008 METTL14Q9HCE5 456 aaKnown RBP31.72■■■□□ 2.67
USP42-202ENST00000404008 IKBKBO14920 756 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 FGF18O76093 207 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 KIF4AO95239 1232 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 TNNC2P02585 160 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 TRIM49P0CI25 452 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 TRIM49CP0CI26 452 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 MARSP56192 900 aaKnown RBP31.71■■■□□ 2.67
USP42-202ENST00000404008 CCDC40Q4G0X9 1142 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 IRF2BP1Q8IU81 584 aa31.71■■■□□ 2.67
USP42-202ENST00000404008 C11orf84Q9BUA3 381 aaPredicted RBP31.71■■■□□ 2.67
USP42-202ENST00000404008 ANO9A1A5B4 782 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 TMEM189-UBE2V1I3L0A0 370 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 AP3M2P53677 418 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 PLCB3Q01970 1234 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 MYL5Q02045 173 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 C9orf57Q5W0N0 161 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 GPR153Q6NV75 609 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 DCLRE1AQ6PJP8 1040 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 C3orf58Q8NDZ4 430 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 CXorf38Q8TB03 319 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 ITGA11Q9UKX5 1188 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 NFE2L3Q9Y4A8 694 aa31.7■■■□□ 2.67
USP42-202ENST00000404008 SCN1AP35498 2009 aa31.7■■■□□ 2.66
USP42-202ENST00000404008 EPOPA6NHQ4 379 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 H3BNC9 293 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 ITGB1P05556 798 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 IGFBP6P24592 240 aaPredicted RBP31.69■■■□□ 2.66
USP42-202ENST00000404008 ZNF697Q5TEC3 545 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 TRAPPC11Q7Z392 1133 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 TMEM169Q96HH4 297 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 CNOT6LQ96LI5 555 aaKnown RBP31.69■■■□□ 2.66
USP42-202ENST00000404008 ADAM28Q9UKQ2 775 aa31.69■■■□□ 2.66
USP42-202ENST00000404008 PIRO00625 290 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 PPEF2O14830 753 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 B3GAT3O94766 335 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 ITGB3P05106 788 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 CD300LGQ6UXG3 332 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 SIX4Q9UIU6 781 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 ZNF165P49910 485 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 PPP3CAQ08209 521 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 DCAF17Q5H9S7 520 aaPredicted RBP31.68■■■□□ 2.66
USP42-202ENST00000404008 TRIM59Q8IWR1 403 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 HASPINQ8TF76 798 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 SLC35C1Q96A29 364 aa31.68■■■□□ 2.66
USP42-202ENST00000404008 SAMSN1Q9NSI8 373 aaKnown RBP31.68■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms