RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 LRFN3Q9BTN0 628 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 LMAN2LQ9H0V9 348 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 MEGF9Q9H1U4 602 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 IPPKQ9H8X2 491 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF277Q9NRM2 450 aaPredicted RBP4.74□□□□□ -1.65
HMGB1-204ENST00000399489 NKIRAS2Q9NYR9 191 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 GRHPRQ9UBQ7 328 aa4.74□□□□□ -1.65
HMGB1-204ENST00000399489 GOLGA8AA7E2F4 631 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 GOLGA8BA8MQT2 603 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 RHPN2P1A8MT19 583 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 TISP43B9A030 160 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 B9A039 149 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 ADAMTS3O15072 1205 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 GSTA4O15217 222 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 HNRNPCP07910 306 aaKnown RBP eCLIP4.73□□□□□ -1.654e-6■□□□□ 10.4
HMGB1-204ENST00000399489 AGXTP21549 392 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 SCP2P22307 547 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 AGFG1P52594 562 aaKnown RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 MAPK10P53779 464 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 KRTAP10-7P60409 375 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 PHC1P78364 1004 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 PAK1Q13153 545 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 PDCD1Q15116 288 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 CNN3Q15417 329 aaKnown RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 TAF12Q16514 161 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 ANO6Q4KMQ2 910 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 HABP4Q5JVS0 413 aaKnown RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 CCDC30Q5VVM6 783 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 NEK10Q6ZWH5 1172 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 HSCBQ8IWL3 235 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF713Q8N859 430 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 ASB12Q8WXK4 309 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 SSH1Q8WYL5 1049 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 CENPIQ92674 756 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 FERMT2Q96AC1 680 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 TMEM41AQ96HV5 264 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 ZSCAN31Q96LW9 406 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 TACO1Q9BSH4 297 aaKnown RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 STK31Q9BXU1 1019 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 MS4A5Q9H3V2 200 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 BRD9Q9H8M2 597 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 STARD7Q9NQZ5 370 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 RIC8BQ9NVN3 520 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 PADI4Q9UM07 663 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 ZFR2Q9UPR6 939 aaKnown RBP4.73□□□□□ -1.65
HMGB1-204ENST00000399489 CORO2BQ9UQ03 480 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 PCDHGB2Q9Y5G2 931 aa4.73□□□□□ -1.65
HMGB1-204ENST00000399489 FRS3O43559 492 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 GJA4P35212 333 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PIK3CAP42336 1068 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ST5P78524 1137 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 GALNT1Q10472 559 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 POLD3Q15054 466 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 GPR19Q15760 415 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 WDR72Q3MJ13 1102 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 SPDYAQ5MJ70 313 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PGBD2Q6P3X8 592 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 OVCH1Q7RTY7 1134 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ZNF527Q8NB42 609 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PCDH19Q8TAB3 1148 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 TGFBRAP1Q8WUH2 860 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PHKBQ93100 1093 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 FBXW5Q969U6 566 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MYCBPQ99417 103 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 KATNBL1Q9H079 304 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 BTBD1Q9H0C5 482 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 WASH6PQ9NQA3 447 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 CATSPERZQ9NTU4 200 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MRGBPQ9NV56 204 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 DNAJC28Q9NX36 388 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 GIMAP2Q9UG22 337 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 TUBD1Q9UJT1 453 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 FSD2A1L4K1 749 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 CAPN8A6NHC0 703 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MGEA5O60502 916 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ALDH2P05091 517 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ATP1A3P13637 1013 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 TSHRP16473 764 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PDCP20941 246 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 HTR1BP28222 390 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 CTNNA1P35221 906 aaKnown RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ACVRL1P37023 503 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 TECP42680 631 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 LIFRP42702 1097 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MTNR1BP49286 362 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ARL4CP56559 192 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 DCAF7P61962 342 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 SMAD3P84022 425 aaKnown RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 DBPQ10586 325 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 GRM1Q13255 1194 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PRKG1Q13976 671 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MEA1Q16626 185 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PGS1Q32NB8 556 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 FAM47CQ5HY64 1035 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 DSTYKQ6XUX3 929 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 TAX1BP1Q86VP1 789 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 HEATR4Q86WZ0 1026 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 PRR18Q8N4B5 295 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 NEIL1Q96FI4 390 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 LTV1Q96GA3 475 aaPredicted RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms