RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CYP3A5P20815 502 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 UPP1Q16831 310 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 C1orf220Q5T0J3 134 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 BEST2Q8NFU1 509 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 SAMD11Q96NU1 681 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 CGRRF1Q99675 332 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 MTMR12Q9C0I1 747 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 INTS13Q9NVM9 706 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 MARCH5Q9NX47 278 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 DPP3Q9NY33 737 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 NLRC5Q86WI3 1866 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 C5orf67F2Z3F1 127 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 RFXAPO00287 272 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 SLC16A3O15427 465 aaKnown RBP23.98■■□□□ 1.43
SHMT1-203ENST00000354098 ITGB1P05556 798 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 VAMP7P51809 220 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 BFSP1Q12934 665 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 INTS8Q75QN2 995 aaKnown RBP23.98■■□□□ 1.43
SHMT1-203ENST00000354098 NT5DC4Q86YG4 428 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 WDR49Q8IV35 697 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 C3orf58Q8NDZ4 430 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 FBXO22Q8NEZ5 403 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 HASPINQ8TF76 798 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 FAM161BQ96MY7 647 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 SPG21Q9NZD8 308 aa23.98■■□□□ 1.43
SHMT1-203ENST00000354098 PPEF2O14830 753 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 XPOTO43592 962 aaKnown RBP23.97■■□□□ 1.43
SHMT1-203ENST00000354098 FGF18O76093 207 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 KIF4AO95239 1232 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 FXR1P51114 621 aaKnown RBP eCLIP23.97■■□□□ 1.43
SHMT1-203ENST00000354098 TMC2Q8TDI7 906 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 IGSF21Q96ID5 467 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 UROC1Q96N76 676 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 PLVAPQ9BX97 442 aa23.97■■□□□ 1.43
SHMT1-203ENST00000354098 ALG13Q9NP73 1137 aaKnown RBP23.97■■□□□ 1.43
SHMT1-203ENST00000354098 PODXLO00592 558 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 RB1P06400 928 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 TMEM191BP0C7N4 346 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 TRIM49P0CI25 452 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 TRIM49CP0CI26 452 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 KRT13P13646 458 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 LRPAP1P30533 357 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 CLDN10P78369 228 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 TPD52L1Q16890 204 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-203ENST00000354098 DUOXA2Q1HG44 320 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 CD300LGQ6UXG3 332 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 C1orf127Q8N9H9 656 aa23.96■■□□□ 1.43
SHMT1-203ENST00000354098 CACTINQ8WUQ7 758 aaKnown RBP23.96■■□□□ 1.43
SHMT1-203ENST00000354098 TMEM265A0A087WTH1 108 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 B3GAT3O94766 335 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 RPL9P32969 192 aaKnown RBP23.95■■□□□ 1.43
SHMT1-203ENST00000354098 GRIN2CQ14957 1233 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 ZNF697Q5TEC3 545 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 C9orf57Q5W0N0 161 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 IRF2BP1Q8IU81 584 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 ENOX1Q8TC92 643 aaKnown RBP23.95■■□□□ 1.43
SHMT1-203ENST00000354098 DDX27Q96GQ7 796 aaKnown RBP23.95■■□□□ 1.43
SHMT1-203ENST00000354098 ANKRD36BP1Q96IX9 119 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 COLEC11Q9BWP8 271 aa23.95■■□□□ 1.43
SHMT1-203ENST00000354098 ARMCX3Q9UH62 379 aaPredicted RBP23.95■■□□□ 1.43
SHMT1-203ENST00000354098 H3BNC9 293 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 ITGB3P05106 788 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 PPM1AP35813 382 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 MCCD1P59942 119 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-203ENST00000354098 GPM6BQ13491 265 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 CCDC40Q4G0X9 1142 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 HSP90AA4PQ58FG1 418 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 DCLRE1AQ6PJP8 1040 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 Q7L0L9 218 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 CXorf38Q8TB03 319 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 GDPD5Q8WTR4 605 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 C11orf84Q9BUA3 381 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-203ENST00000354098 VN1R3Q9BXE9 311 aa23.95■■□□□ 1.42
SHMT1-203ENST00000354098 ANO9A1A5B4 782 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 GRM6O15303 877 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 FGFR1OPO95684 399 aaKnown RBP23.94■■□□□ 1.42
SHMT1-203ENST00000354098 TNNC2P02585 160 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 TRAPPC11Q7Z392 1133 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 FRMD5Q7Z6J6 570 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 SPPL3Q8TCT6 385 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 TMEM169Q96HH4 297 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 PRDM12Q9H4Q4 367 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 SAMSN1Q9NSI8 373 aaKnown RBP23.94■■□□□ 1.42
SHMT1-203ENST00000354098 SIX4Q9UIU6 781 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 ADAM28Q9UKQ2 775 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 NFE2L3Q9Y4A8 694 aa23.94■■□□□ 1.42
SHMT1-203ENST00000354098 PIRO00625 290 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 TADA2AO75478 443 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 DNAJB1P25685 340 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 PLCB3Q01970 1234 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 PPP3CAQ08209 521 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 CREBRFQ8IUR6 639 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 MMRN2Q9H8L6 949 aa23.93■■□□□ 1.42
SHMT1-203ENST00000354098 IKBKBO14920 756 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 C4BPAP04003 597 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 KRT19P08727 400 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 POLR2BP30876 1174 aaKnown RBP23.92■■□□□ 1.42
SHMT1-203ENST00000354098 BRCC3P46736 316 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 GCLMP48507 274 aa23.92■■□□□ 1.42
SHMT1-203ENST00000354098 DCAF17Q5H9S7 520 aaPredicted RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms