RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MXI1P50539 228 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 IRF5Q13568 498 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 DCAF6Q58WW2 860 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 FAXCQ5TGI0 409 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 DNAAF3Q8N9W5 541 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 TMA16Q96EY4 203 aaKnown RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 C8orf33Q9H7E9 229 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 UBE2ZQ9H832 354 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-203ENST00000341423 ARHGEF4Q9NR80 690 aa8.93□□□□□ -0.98
HMGB1-203ENST00000341423 IFRD1O00458 451 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 YWHABP31946 246 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 MAP9Q49MG5 647 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 NOC4LQ9BVI4 516 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 TRAIPQ9BWF2 469 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 STOML1Q9UBI4 398 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 COLQQ9Y215 455 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SIT1Q9Y3P8 196 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 PPME1Q9Y570 386 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CNTNAP2Q9UHC6 1331 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 TMX2-CTNND1H3BSU7 103 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CACNB4O00305 520 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CCND3P30281 292 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CASRP41180 1078 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 RABGGTBP53611 331 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 THOC5Q13769 683 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CFAP157Q5JU67 520 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 TPRG1Q6ZUI0 275 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SZRD1Q7Z422 152 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 UBALD2Q8IYN6 164 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 NECAB1Q8N987 351 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 TMEM145Q8NBT3 493 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 LRRN4CLQ8ND94 238 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SNIP1Q8TAD8 396 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 RSAD2Q8WXG1 361 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ING5Q8WYH8 240 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 PPP1R13BQ96KQ4 1090 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SLC13A1Q9BZW2 595 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ALKBH4Q9NXW9 302 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 AGO2Q9UKV8 859 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ASB3Q9Y575 518 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 C8AP07357 584 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 OR1D2P34982 312 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 PPP4CP60510 307 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 KIF5AQ12840 1032 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 OLFML2BQ68BL8 750 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ANO7Q6IWH7 933 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 DCLRE1AQ6PJP8 1040 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SIX5Q8N196 739 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF248Q8NDW4 579 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 RNF26Q9BY78 433 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 PLEKHA4Q9H4M7 779 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 E7EWF7 191 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 AP5Z1O43299 807 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 LMAN2Q12907 356 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ARSJQ5FYB0 599 aaPredicted RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CEP128Q6ZU80 1094 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 FAM98AQ8NCA5 519 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 TFB1MQ8WVM0 346 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 ZCCHC2Q9C0B9 1178 aaKnown RBP8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SLAMF7Q9NQ25 335 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 VPS51Q9UID3 782 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 SALL1Q9NSC2 1324 aa8.92□□□□□ -0.98
HMGB1-203ENST00000341423 CYB561D2O14569 222 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SLC16A4O15374 487 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PDGFRBP09619 1106 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SPATA31D3P0C874 917 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PSMC2P35998 433 aaKnown RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 STAT1P42224 750 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ACTN3Q08043 901 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PLEKHG6Q3KR16 790 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 DGKKQ5KSL6 1271 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SPATA31D4Q6ZUB0 917 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 RPAINQ86UA6 219 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 BBS2Q9BXC9 721 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 FSD1LQ9BXM9 530 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ALG6Q9Y672 507 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 A0A1W2PPC1 479 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SLC12A8A0AV02 714 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 NT5C1B-RDH14C9J2C7 533 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 IL1BP01584 269 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 TAS2R42Q7RTR8 314 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 CENPSQ8N2Z9 138 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 RPRD1AQ96P16 312 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SLC2A4RGQ9NR83 387 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 RBAKQ9NYW8 714 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SFMBT1Q9UHJ3 866 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 DBNLQ9UJU6 430 aaKnown RBP8.91□□□□□ -0.98
HMGB1-203ENST00000341423 SLC39A10Q9ULF5 831 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ADGRA2Q96PE1 1338 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 TBC1D4O60343 1298 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 TBC1D12O60347 775 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GSTA1P08263 222 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 GSTA2P09210 222 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 YWHAQP27348 245 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 ID4P47928 161 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 STX17P56962 302 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PHEXP78562 749 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PPP1R7Q15435 360 aa8.91□□□□□ -0.98
HMGB1-203ENST00000341423 PHF19Q5T6S3 580 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms