RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RIMBP3Q9UFD9 1639 aa9.15□□□□□ -0.94
RTN3-202ENST00000339997 ARHGAP10A1A4S6 786 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 EME2A4GXA9 379 aaPredicted RBP9.15□□□□□ -0.95
RTN3-202ENST00000339997 PARNO95453 639 aaKnown RBP9.15□□□□□ -0.95
RTN3-202ENST00000339997 TOB1P50616 345 aaPredicted RBP9.15□□□□□ -0.95
RTN3-202ENST00000339997 SPP2Q13103 211 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 DYNC1I2Q13409 638 aaKnown RBP9.15□□□□□ -0.95
RTN3-202ENST00000339997 GRM4Q14833 912 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 MAPK6Q16659 721 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 MTMR8Q96EF0 704 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 TTC25Q96NG3 672 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 OSBPL8Q9BZF1 889 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 ISCUQ9H1K1 167 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 CARD9Q9H257 536 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 BFARQ9NZS9 450 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 APEX2Q9UBZ4 518 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 XPO7Q9UIA9 1087 aaKnown RBP9.15□□□□□ -0.95
RTN3-202ENST00000339997 TSC22D4Q9Y3Q8 395 aa9.15□□□□□ -0.95
RTN3-202ENST00000339997 C21orf2O43822 256 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 CST8O60676 142 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PHF2O75151 1096 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 QARSP47897 775 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 BLVRAP53004 296 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 NME5P56597 212 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 HERVK_113P62684 666 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 NR1H3Q13133 447 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PTK7Q13308 1070 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 KCNB1Q14721 858 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 STAT4Q14765 748 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 NAB2Q15742 525 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 KCTD21Q4G0X4 260 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 HACE1Q8IYU2 909 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PTPRHQ9HD43 1115 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 MAP1BP46821 2468 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 CHEK2O96017 543 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 VCAM1P19320 739 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 KCNJ6P48051 423 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 FLOT2Q14254 428 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PTPAQ15257 358 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 CYP4A22Q5TCH4 519 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 DSTYKQ6XUX3 929 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 FAM71DQ8N9W8 422 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 HNRNPLLQ8WVV9 542 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 AS3MTQ9HBK9 375 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 SH3GLB2Q9NR46 395 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 SSU72P8A0A1W2PR75 194 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 KPNA7A9QM74 516 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 KCNA2P16389 499 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 XPAP23025 273 aaPredicted RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 TRPC1P48995 793 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 MAPK10P53779 464 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 IFI35P80217 286 aaPredicted RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 CHI3L2Q15782 390 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 MTDHQ86UE4 582 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 CCSER1Q9C0I3 900 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 RANBP17Q9H2T7 1088 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 ASNSD1Q9NWL6 643 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 ARHGAP20Q9P2F6 1191 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 NAGPAQ9UK23 515 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PLAGL2Q9UPG8 496 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 DIS3Q9Y2L1 958 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 PITPNM2Q9BZ72 1349 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 FOXN3O00409 490 aaPredicted RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 PFDN6O15212 129 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PDGFRBP09619 1106 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 RBP3P10745 1247 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 PWP1Q13610 501 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 RUBCNLQ9H714 662 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 DDX18Q9NVP1 670 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 PIH1D1Q9NWS0 290 aaKnown RBP9.14□□□□□ -0.95
RTN3-202ENST00000339997 PHTF1Q9UMS5 762 aa9.14□□□□□ -0.95
RTN3-202ENST00000339997 TAL1P17542 331 aaPredicted RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 ST3GAL1Q11201 340 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 ARHGAP27Q6ZUM4 889 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 CCT7Q99832 543 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 FAM49BQ9NUQ9 324 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.13□□□□□ -0.95
RTN3-202ENST00000339997 AIPL1Q9NZN9 384 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 AGO2Q9UKV8 859 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 POLIQ9UNA4 740 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 ITM2BQ9Y287 266 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GOLGA8QA0A0J9YX86 632 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GOLGA8OA6NCC3 632 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GOLGA8NF8WBI6 632 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 PYGBP11216 843 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 NQO1P15559 274 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 PDGFRAP16234 1089 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 GCLCP48506 637 aaPredicted RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 TMED10P49755 219 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 IRX1P78414 480 aaPredicted RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 EARS2Q5JPH6 523 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 BNIPLQ7Z465 357 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 MMGT1Q8N4V1 131 aa9.13□□□□□ -0.95
RTN3-202ENST00000339997 TSEN2Q8NCE0 465 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.13□□□□□ -0.95
RTN3-202ENST00000339997 CDCA7Q9BWT1 371 aaPredicted RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 POLR3FQ9H1D9 316 aaPredicted RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 DDX20Q9UHI6 824 aaKnown RBP9.13□□□□□ -0.95
RTN3-202ENST00000339997 CPDO75976 1380 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms