RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 GNAI3P08754 354 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 MYBP10242 640 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 TRIM27P14373 513 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 RHCEP18577 417 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 HK1P19367 917 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 HIBADHP31937 336 aaKnown RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 PIK3CGP48736 1102 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 MAN2A2P49641 1150 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 RABGGTBP53611 331 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 GNAI1P63096 354 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 FAM193AP78312 1265 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 RHDQ02161 417 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 UBXN2BQ14CS0 331 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 SPTY2D1Q68D10 685 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 CYB5RLQ6IPT4 315 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 PPP4R4Q6NUP7 873 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 DARS2Q6PI48 645 aaKnown RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 CCDC149Q6ZUS6 474 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 MAEAQ7L5Y9 396 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 CCAR1Q8IX12 1150 aaKnown RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 AOPEPQ8N6M6 819 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 OR10H5Q8NGA6 315 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 MNTQ99583 582 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 SARGQ9BW04 601 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 CPEB1Q9BZB8 566 aaKnown RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 DEF6Q9H4E7 631 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 DDX21Q9NR30 783 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 AURKAIP1Q9NWT8 199 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-201ENST00000326004 JKAMPQ9P055 326 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 POGKQ9P215 609 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 ZDHHC8Q9ULC8 765 aa4.24□□□□□ -1.73
HMGB1-201ENST00000326004 TCRBV7S2A1N4TA0A589 114 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 KRTAP23-1A1A580 65 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 KLRG2A4D1S0 409 aaPredicted RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 A6NNZ2 444 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 BTBD11A6QL63 1104 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 DIRC3C9JPN6 131 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 PHGDHO43175 533 aaKnown RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 FRS3O43559 492 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 PLIN1O60240 522 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 PHKG2P15735 406 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CNGB1Q14028 1251 aaPredicted RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 PRKD1Q15139 912 aaPredicted RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CNN3Q15417 329 aaKnown RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CCDC93Q567U6 631 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 EMC10Q5UCC4 262 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 C1QL3Q5VWW1 255 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 ZNF365Q70YC5 407 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 UBE3BQ7Z3V4 1068 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 PDSS2Q86YH6 399 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CCDC146Q8IYE0 955 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 FITM2Q8N6M3 262 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 RNF169Q8NCN4 708 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 FAM156AQ8NDB6 213 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 PLBD2Q8NHP8 589 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 FBXO41Q8TF61 875 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 TIFAQ96CG3 184 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 WWC2-AS2Q96NR7 200 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 ADOQ96SZ5 270 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CDK5RAP1Q96SZ6 601 aaKnown RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 GPR87Q9BY21 358 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 REXO4Q9GZR2 422 aaKnown RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 MRPL46Q9H2W6 279 aaKnown RBP4.23□□□□□ -1.73
HMGB1-201ENST00000326004 ARNT2Q9HBZ2 717 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 FBXO34Q9NWN3 711 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CFAP97Q9P2B7 532 aa4.23□□□□□ -1.73
HMGB1-201ENST00000326004 CCDC194A0A1B0GVG4 234 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 DRGXA6NNA5 263 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 GOLIM4O00461 696 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 MUSKO15146 869 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 FOXD2O60548 495 aaPredicted RBP4.22□□□□□ -1.73
HMGB1-201ENST00000326004 SBK3P0C264 359 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 ACRV1P26436 265 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 CRHR2Q13324 411 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 GALEQ14376 348 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 KIF22Q14807 665 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 LLGL1Q15334 1064 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 SAFBQ15424 915 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB1-201ENST00000326004 CSRP2Q16527 193 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 KIAA0753Q2KHM9 967 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 RNF220Q5VTB9 566 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 Q6ZRM9 215 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 C11orf96Q7Z7L8 435 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 SH2D3CQ8N5H7 860 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 DCLRE1CQ96SD1 692 aaKnown RBP4.22□□□□□ -1.73
HMGB1-201ENST00000326004 KLC2Q9H0B6 622 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 GSTO2Q9H4Y5 243 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 BRD9Q9H8M2 597 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 ARMT1Q9H993 441 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 PIH1D1Q9NWS0 290 aaKnown RBP4.22□□□□□ -1.73
HMGB1-201ENST00000326004 SMPD4Q9NXE4 827 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 ST6GALNAC2Q9UJ37 374 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 TESMINQ9Y4I5 508 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 PCDHA1Q9Y5I3 950 aa4.22□□□□□ -1.73
HMGB1-201ENST00000326004 XDHP47989 1333 aa4.21□□□□□ -1.73
HMGB1-201ENST00000326004 A0A1W2PPL8 197 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 TRIM24O15164 1050 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 MGEA5O60502 916 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 RECQL4O94761 1208 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 MATN4O95460 622 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms