RNA–Protein interactions for RNA: ENST00000312547.6

CHMP2A-201, Transcript of charged multivesicular body protein 2A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP2A, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-201ENST00000312547 ZACNQ401N2 412 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 PAN2Q504Q3 1202 aaKnown RBP13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 SV2AQ7L0J3 742 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 TRAPPC11Q7Z392 1133 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 TMEM130Q8N3G9 435 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 C1orf127Q8N9H9 656 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 RNF214Q8ND24 703 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 BEST2Q8NFU1 509 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 CACTINQ8WUQ7 758 aaKnown RBP13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 RBSNQ9H1K0 784 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 SIX4Q9UIU6 781 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 PCDHA11Q9Y5I1 949 aa13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 MRPL42Q9Y6G3 142 aaKnown RBP13.68□□□□□ -0.22
CHMP2A-201ENST00000312547 RALGAPA2Q2PPJ7 1873 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 ANO9A1A5B4 782 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 SOX1O00570 391 aaPredicted RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 STX10O60499 249 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 TMEM191BP0C7N4 346 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 RPL9P32969 192 aaKnown RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 MTIF2P46199 727 aaKnown RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 GCLMP48507 274 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 MAN2A1Q16706 1144 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 CBWD6Q4V339 395 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 DCAF17Q5H9S7 520 aaPredicted RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 CBWD3Q5JTY5 395 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 MIIPQ5JXC2 388 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 CBWD5Q5RIA9 395 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 TCERG1LQ5VWI1 586 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 TDRD10Q5VZ19 366 aaKnown RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 SCARA3Q6AZY7 606 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 FIBCD1Q8N539 461 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 CLP1Q92989 425 aaKnown RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 ANKRD36BP1Q96IX9 119 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 TMEM175Q9BSA9 504 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 TUBGCP2Q9BSJ2 902 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 GOLGA2P5Q9HBQ8 144 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 TMEM8AQ9HCN3 771 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 DPP3Q9NY33 737 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 DNAJB4Q9UDY4 337 aa13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 YBX2Q9Y2T7 364 aaKnown RBP13.67□□□□□ -0.22
CHMP2A-201ENST00000312547 CASTOR2A6NHX0 329 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 GOLGA6L19H0YKK7 550 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 PIRO00625 290 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 ARHGEF15O94989 841 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 TNNC2P02585 160 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 AFPP02771 609 aaKnown RBP13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 GALTP07902 379 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 MYOGP15173 224 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 SLC11A1P49279 550 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 FMO5P49326 533 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 MXI1P50539 228 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 TPM4P67936 248 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 RNASELQ05823 741 aaKnown RBP13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 KCNH2Q12809 1159 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 UPP1Q16831 310 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 VWA3BQ502W6 1294 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 C9orf57Q5W0N0 161 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 KRT39Q6A163 491 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 DDX27Q96GQ7 796 aaKnown RBP13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 UROC1Q96N76 676 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 PAAF1Q9BRP4 392 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 PBX4Q9BYU1 374 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 TAB2Q9NYJ8 693 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 CACNG4Q9UBN1 327 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 ITGA11Q9UKX5 1188 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 COQ4Q9Y3A0 265 aa13.66□□□□□ -0.22
CHMP2A-201ENST00000312547 LINC01553A4QN01 128 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 TMEM189-UBE2V1I3L0A0 370 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 TULP1O00294 542 aaPredicted RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 PODXLO00592 558 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 PPEF2O14830 753 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 P4HA2O15460 535 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 N4BP1O75113 896 aaKnown RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 ZC3H11AO75152 810 aaKnown RBP eCLIP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 VNN1O95497 513 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 ITGB3P05106 788 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 LAG3P18627 525 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 CDK11BP21127 795 aaKnown RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 IGFBP6P24592 240 aaPredicted RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 PBX2P40425 430 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 CLCNKBP51801 687 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 COPB1P53618 953 aaKnown RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 BCAR1P56945 870 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 RBP5P82980 135 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 SMAD3P84022 425 aaKnown RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 LRIT3Q3SXY7 679 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 CD300LGQ6UXG3 332 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 CREBRFQ8IUR6 639 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 ANKRD20A12PQ8NF67 263 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 TAS1R2Q8TE23 839 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 FAM193BQ96PV7 902 aaPredicted RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 NDST4Q9H3R1 872 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 MARCH5Q9NX47 278 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 ANK1P16157 1881 aa13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 FNDC1Q4ZHG4 1894 aaPredicted RBP13.65□□□□□ -0.22
CHMP2A-201ENST00000312547 EYSQ5T1H1 3165 aa13.65□□□□□ -0.23
CHMP2A-201ENST00000312547 CARNS1A5YM72 827 aa13.64□□□□□ -0.23
CHMP2A-201ENST00000312547 LGALS16A8MUM7 142 aa13.64□□□□□ -0.23
CHMP2A-201ENST00000312547 NRP1O14786 923 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms