RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 RBM23Q86U06 439 aaKnown RBP10.74□□□□□ -0.69
CLN3-261ENST00000637686 SYCP3Q8IZU3 236 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 VPS52Q8N1B4 723 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 FAM200AQ8TCP9 573 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 SNX27Q96L92 541 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 ZMAT2Q96NC0 199 aaKnown RBP10.74□□□□□ -0.69
CLN3-261ENST00000637686 PPP1R10Q96QC0 940 aaKnown RBP10.74□□□□□ -0.69
CLN3-261ENST00000637686 COLEC11Q9BWP8 271 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 VN1R3Q9BXE9 311 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 IGFLR1Q9H665 355 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 SLC39A2Q9NP94 309 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 EXOC1Q9NV70 894 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 STYXL1Q9Y6J8 313 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 UBE4BO95155 1302 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 MYO7AQ13402 2215 aa10.74□□□□□ -0.69
CLN3-261ENST00000637686 HIDE1A8MVS5 230 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 PER2O15055 1255 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 FAM189A1O60320 539 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 TADA2AO75478 443 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 CXCL14O95715 111 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 CLTAP09496 248 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 KCNE1P15382 129 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 ERCC5P28715 1186 aaPredicted RBP10.73□□□□□ -0.69
CLN3-261ENST00000637686 CA8P35219 290 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 GTF2F1P35269 517 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLN3-261ENST00000637686 ACOT2P49753 483 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 SPAG1Q07617 926 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 STIM1Q13586 685 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 SMC1AQ14683 1233 aaKnown RBP10.73□□□□□ -0.69
CLN3-261ENST00000637686 KYAT1Q16773 422 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 KMT5BQ4FZB7 885 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 PDE12Q6L8Q7 609 aaKnown RBP10.73□□□□□ -0.69
CLN3-261ENST00000637686 STXBP4Q6ZWJ1 553 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 TAS1R1Q7RTX1 841 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 POMGNT1Q8WZA1 660 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 HLA-CQ95604 372 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 PAAF1Q9BRP4 392 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 TMEM206Q9H813 350 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 RPF1Q9H9Y2 349 aaKnown RBP10.73□□□□□ -0.69
CLN3-261ENST00000637686 NGRNQ9NPE2 291 aaKnown RBP10.73□□□□□ -0.69
CLN3-261ENST00000637686 CNTN3Q9P232 1028 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 AGO2Q9UKV8 859 aaKnown RBP10.73□□□□□ -0.69
CLN3-261ENST00000637686 TRIP11Q15643 1979 aa10.73□□□□□ -0.69
CLN3-261ENST00000637686 TTC26A0AVF1 554 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 FSD2A1L4K1 749 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 LACTBL1A8MY62 500 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 IKBKBO14920 756 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 EIF3DO15371 548 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLN3-261ENST00000637686 CTSAP10619 480 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 BMP6P22004 513 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 HOXD13P35453 343 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 NRIP1P48552 1158 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 CLCNKBP51801 687 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 PPP2R3AQ06190 1150 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 SOX4Q06945 474 aaPredicted RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 HSP90AA2PQ14568 343 aaPredicted RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 BMS1Q14692 1282 aaKnown RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 ENOX2Q16206 610 aaKnown RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 UVSSAQ2YD98 709 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 EP400NLQ6ZTU2 488 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 EPM2AIP1Q7L775 607 aaPredicted RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLN3-261ENST00000637686 NELFCDQ8IXH7 590 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 GUF1Q8N442 669 aaKnown RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 MRPL43Q8N983 215 aaKnown RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 ZNF507Q8TCN5 953 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 HASPINQ8TF76 798 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 SCFD1Q8WVM8 642 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 AUTS2Q8WXX7 1259 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 PPP2R3CQ969Q6 453 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 C18orf25Q96B23 403 aaPredicted RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 FAM212AQ96EL1 285 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 KIF12Q96FN5 646 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 DHTKD1Q96HY7 919 aaPredicted RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 GPR62Q9BZJ7 368 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 ZBP1Q9H171 429 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 PCIF1Q9H4Z3 704 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 TLE6Q9H808 572 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 PLEKHA5Q9HAU0 1116 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 GOLGA2P5Q9HBQ8 144 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 SLC38A7Q9NVC3 462 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 THEGQ9P2T0 379 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 CPSF3Q9UKF6 684 aaKnown RBP10.72□□□□□ -0.69
CLN3-261ENST00000637686 ADAM28Q9UKQ2 775 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 CITO14578 2027 aa10.72□□□□□ -0.69
CLN3-261ENST00000637686 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 C2orf71A6NGG8 1288 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 TULP1O00294 542 aaPredicted RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 LINC01565O15544 149 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 TGFB1I1O43294 461 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 B3GAT3O94766 335 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 KIF4AO95239 1232 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 EFEMP2O95967 443 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 SOD2P04179 222 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 GARTP22102 1010 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 IGFBP6P24592 240 aaPredicted RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 ZNF165P49910 485 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 TFF2Q03403 129 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 STK4Q13043 487 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 GSE1Q14687 1217 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms