RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 EIF4A3P38919 411 aaKnown RBP21.71■■□□□ 1.07
CLN3-250ENST00000636839 TRAPPC11Q7Z392 1133 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 PPM1KQ8N3J5 372 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 HELQQ8TDG4 1101 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 ACAP3Q96P50 834 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 ARID3AQ99856 593 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 STK33Q9BYT3 514 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 SPTLC3Q9NUV7 552 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 AIPL1Q9NZN9 384 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 PPP2R2CQ9Y2T4 447 aa21.71■■□□□ 1.07
CLN3-250ENST00000636839 A0A0U1RQG5 324 aaPredicted RBP21.7■■□□□ 1.06
CLN3-250ENST00000636839 ARVCFO00192 962 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 DNM1LO00429 736 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 GHRP10912 638 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 PIK3CAP42336 1068 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 GUCY2FP51841 1108 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 APOBEC3GQ9HC16 384 aaKnown RBP21.7■■□□□ 1.06
CLN3-250ENST00000636839 OGDHLQ9ULD0 1010 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 TFR2Q9UP52 801 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 REXO2Q9Y3B8 237 aaKnown RBP21.7■■□□□ 1.06
CLN3-250ENST00000636839 ADGRG1Q9Y653 693 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 EPN1Q9Y6I3 576 aaPredicted RBP21.7■■□□□ 1.06
CLN3-250ENST00000636839 PHACTR2O75167 634 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 GRM5P41594 1212 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 PTPN11Q06124 597 aaPredicted RBP21.7■■□□□ 1.06
CLN3-250ENST00000636839 PCBP1Q15365 356 aaKnown RBP eCLIP21.7■■□□□ 1.06
CLN3-250ENST00000636839 DUOXA2Q1HG44 320 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 PPP1R13BQ96KQ4 1090 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 UMODL1Q5DID0 1318 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 MROH7Q68CQ1 1323 aa21.7■■□□□ 1.06
CLN3-250ENST00000636839 ANK1P16157 1881 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 NDUFA10O95299 355 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 CD52P31358 61 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 CDK17Q00537 523 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 CYP27A1Q02318 531 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 NCOA4Q13772 614 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 HSP90AA2PQ14568 343 aaPredicted RBP21.69■■□□□ 1.06
CLN3-250ENST00000636839 ASIC2Q16515 512 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 DCAF4L1Q3SXM0 396 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 CTU1Q7Z7A3 348 aaKnown RBP21.69■■□□□ 1.06
CLN3-250ENST00000636839 REXO1L1PQ8IX06 675 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 SYN2Q92777 582 aaPredicted RBP21.69■■□□□ 1.06
CLN3-250ENST00000636839 TRIM6Q9C030 488 aaPredicted RBP21.69■■□□□ 1.06
CLN3-250ENST00000636839 KLK14Q9P0G3 267 aa21.69■■□□□ 1.06
CLN3-250ENST00000636839 ZNF263O14978 683 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 ABL1P00519 1130 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 CKBP12277 381 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 AXLP30530 894 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 KCNJ6P48051 423 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 MNX1P50219 401 aaPredicted RBP21.68■■□□□ 1.06
CLN3-250ENST00000636839 MYL6P60660 151 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 LPIN1Q14693 890 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 FBXO47Q5MNV8 452 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 ZNF710Q8N1W2 664 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 ZMAT2Q96NC0 199 aaKnown RBP21.68■■□□□ 1.06
CLN3-250ENST00000636839 HAUS4Q9H6D7 363 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 IL18RAPO95256 599 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 SOX5P35711 763 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 CDK7P50613 346 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 ATN1P54259 1190 aaPredicted RBP21.68■■□□□ 1.06
CLN3-250ENST00000636839 TDRD12Q587J7 1177 aaKnown RBP21.68■■□□□ 1.06
CLN3-250ENST00000636839 TWF2Q6IBS0 349 aaKnown RBP21.68■■□□□ 1.06
CLN3-250ENST00000636839 TRAF7Q6Q0C0 670 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 SMG8Q8ND04 991 aaKnown RBP21.68■■□□□ 1.06
CLN3-250ENST00000636839 NT5C1BQ96P26 610 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 ACP6Q9NPH0 428 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 PADI3Q9ULW8 664 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 NUB1Q9Y5A7 615 aa21.68■■□□□ 1.06
CLN3-250ENST00000636839 FAM170AA1A519 330 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 MEIS3P2A8K0S8 358 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 EVI5O60447 810 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 SERPING1P05155 500 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 TMEM191BP0C7N4 346 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 PTK2Q05397 1052 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 KLHL30Q0D2K2 578 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 MBTPS1Q14703 1052 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 ASTE1Q2TB18 679 aaPredicted RBP21.67■■□□□ 1.06
CLN3-250ENST00000636839 C1orf127Q8N9H9 656 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 ZNF333Q96JL9 665 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 CCDC42Q96M95 316 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 CCDC94Q9BW85 323 aaPredicted RBP21.67■■□□□ 1.06
CLN3-250ENST00000636839 NUCKS1Q9H1E3 243 aaKnown RBP21.67■■□□□ 1.06
CLN3-250ENST00000636839 SIX4Q9UIU6 781 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 IPPQ9Y573 584 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 RECQL4O94761 1208 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 CALCAP01258 141 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 STAT1P42224 750 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 SURF1Q15526 300 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 GLRA4Q5JXX5 417 aa21.67■■□□□ 1.06
CLN3-250ENST00000636839 ZNF571Q7Z3V5 609 aaPredicted RBP21.67■■□□□ 1.06
CLN3-250ENST00000636839 MGEA5O60502 916 aa21.66■■□□□ 1.06
CLN3-250ENST00000636839 CLSTN1O94985 981 aa21.66■■□□□ 1.06
CLN3-250ENST00000636839 USP8P40818 1118 aa21.66■■□□□ 1.06
CLN3-250ENST00000636839 GFPT1Q06210 699 aaPredicted RBP21.66■■□□□ 1.06
CLN3-250ENST00000636839 CXorf38Q8TB03 319 aa21.66■■□□□ 1.06
CLN3-250ENST00000636839 U2AF1L4Q8WU68 220 aaKnown RBP21.66■■□□□ 1.06
CLN3-250ENST00000636839 C16orf45Q96MC5 204 aaPredicted RBP21.66■■□□□ 1.06
CLN3-250ENST00000636839 ERVK-5Q9HDB9 667 aa21.66■■□□□ 1.06
CLN3-250ENST00000636839 KCND1Q9NSA2 647 aa21.66■■□□□ 1.06
CLN3-250ENST00000636839 TFRCP02786 760 aaKnown RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms