RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	PARD3B	Q8TEW8	1205 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FAM84A	Q96KN4	292 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PPP1R13B	Q96KQ4	1090 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NLRP4	Q96MN2	994 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	DESI2	Q9BSY9	194 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NFKBIZ	Q9BYH8	718 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	C2orf40	Q9H1Z8	148 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FZD8	Q9H461	694 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SETD4	Q9NVD3	440 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TRMT1	Q9NXH9	659 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GCNT4	Q9P109	453 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CEP72	Q9P209	647 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GTF2IRD1	Q9UHL9	959 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TCF20	Q9UGU0	1960 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CDH23	Q9H251	3354 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MBLAC1	A4D2B0	266 aa	Predicted RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	LRRIQ3	A6PVS8	624 aa	Predicted RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	KIAA0391	O15091	583 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	VTN	P04004	478 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PLEK	P08567	350 aa	Predicted RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SMIM10L2A	P0DMW4	78 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SMIM10L2B	P0DMW5	78 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	UCHL3	P15374	230 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PROZ	P22891	400 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	HOXC8	P31273	242 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PSEN2	P49810	448 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	KCNQ1	P51787	676 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NLRP11	P59045	1033 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CHMP4BP1	P59074	171 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	POLR2F	P61218	127 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ERVK-21	P61565	698 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	WDR5	P61964	334 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CYP24A1	Q07973	514 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	AMHR2	Q16671	573 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	KIAA0753	Q2KHM9	967 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	HGSNAT	Q68CP4	663 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SLFN12L	Q6IEE8	588 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PDXDC1	Q6P996	788 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GJB7	Q6PEY0	223 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TRIM65	Q6PJ69	517 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ZPBP2	Q6X784	338 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GPD1L	Q8N335	351 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TGS1	Q96RS0	853 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	POP1	Q99575	1024 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ACO2	Q99798	780 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	EDEM3	Q9BZQ6	932 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PTPRH	Q9HD43	1115 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	NLRC4	Q9NPP4	1024 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TOPORS	Q9NS56	1045 aa	Predicted RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ZNHIT6	Q9NWK9	470 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ARHGAP20	Q9P2F6	1191 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	REXO2	Q9Y3B8	237 aa	Known RBP	10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FHOD1	Q9Y613	1164 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	BDP1	A6H8Y1	2624 aa		10.3	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PTPRJ	Q12913	1337 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	EPOP	A6NHQ4	379 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	B4GALT5	O43286	388 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CCP110	O43303	1012 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CSDE1	O75534	798 aa	Known RBP	10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PRKCB	P05771	671 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CKB	P12277	381 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	VCAN	P13611	3396 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CLDN10	P78369	228 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CDK17	Q00537	523 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	POU5F1B	Q06416	359 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MFSD10	Q14728	455 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MAPK6	Q16659	721 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	EPC2	Q52LR7	807 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CYP26C1	Q6V0L0	522 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GBP6	Q6ZN66	633 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CACNA2D4	Q7Z3S7	1137 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	USP37	Q86T82	979 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TMTC1	Q8IUR5	882 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GPIHBP1	Q8IV16	184 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ZNF516	Q92618	1163 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FAM213A	Q9BRX8	229 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TMEM117	Q9H0C3	514 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	KIAA1586	Q9HCI6	787 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PPP2R2C	Q9Y2T4	447 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ADGRG1	Q9Y653	693 aa		10.29	□□□□□ -0.76
PDLIM5-223	ENST00000627587	CIT	O14578	2027 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587		A0A087WZ62	844 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	RRN3P2	A6NIE6	340 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	FANCG	O15287	622 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	PMM2	O15305	246 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	EXTL3	O43909	919 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	LPXN	O60711	386 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	N4BP1	O75113	896 aa	Known RBP	10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GJB5	O95377	273 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GCLM	P48507	274 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	ACOT2	P49753	483 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GPC3	P51654	580 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	JAM2	P57087	298 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	MYL7	Q01449	175 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	GPNMB	Q14956	572 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	SEZ6	Q53EL9	994 aa		10.28	□□□□□ -0.76
PDLIM5-223	ENST00000627587	TMEM31	Q5JXX7	168 aa		10.28	□□□□□ -0.76

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