RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ZNF653Q96CK0 615 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 CCDC51Q96ER9 411 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 CDT1Q9H211 546 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 CENPHQ9H3R5 247 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PHIPQ8WWQ0 1821 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 KIF3CO14782 793 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 CCP110O43303 1012 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PBX3P40426 434 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PPP2R5AQ15172 486 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 NBPF20Q3BBV1 942 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PEX26Q7Z412 305 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 NOX5Q96PH1 765 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 SYNCQ9H7C4 482 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PNMA2Q9UL42 364 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 PTPN22Q9Y2R2 807 aa11.32□□□□□ -0.6
VPS11-208ENST00000621676 NFASCO94856 1347 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 CTAGE15A4D2H0 777 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 EIF3CLB5ME19 914 aaKnown RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 UPP2O95045 317 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 C22orf31O95567 290 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 CTAGE8P0CG41 777 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 ICAM3P32942 547 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 GRB14Q14449 540 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 ATP13A4Q4VNC1 1196 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 IER5Q5VY09 327 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 CTAGE6Q86UF2 777 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 DDX42Q86XP3 938 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS11-208ENST00000621676 CTAGE4Q8IX94 777 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 NDRG1Q92597 394 aaKnown RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 EIF3CQ99613 913 aaKnown RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 MANSC4A6NHS7 340 aaPredicted RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 TOM1L1O75674 476 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 POMCP01189 267 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 ZBTB48P10074 688 aaPredicted RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 GTF2H1P32780 548 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 MFSD10Q14728 455 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 SMAD1Q15797 465 aaKnown RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 BMT2Q1RMZ1 405 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 DNAJC21Q5F1R6 531 aaKnown RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 ZNF618Q5T7W0 954 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 TMCO2Q7Z6W1 182 aaPredicted RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 PRUNE1Q86TP1 453 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 EMC1Q8N766 993 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 ACO2Q99798 780 aaKnown RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 PARD6BQ9BYG5 372 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 C10orf88Q9H8K7 445 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 CHD7Q9P2D1 2997 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 TRIM17Q9Y577 477 aa11.31□□□□□ -0.6
VPS11-208ENST00000621676 ZNF646O15015 1829 aaPredicted RBP11.31□□□□□ -0.6
VPS11-208ENST00000621676 F5H423 210 aaPredicted RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 SPOPO43791 374 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 EXTL3O43909 919 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 BUB1BO60566 1050 aaPredicted RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 LYPLA2O95372 231 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 VNN1O95497 513 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 TARBP2Q15633 366 aaKnown RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 ZNF699Q32M78 642 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 GOLGA5Q8TBA6 731 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 MIS12Q9H081 205 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 SMYD3Q9H7B4 428 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 PDLIM7Q9NR12 457 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 KCND2Q9NZV8 630 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 F8W810 466 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 ATG7O95352 703 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 ASGR1P07306 291 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 ITGA4P13612 1032 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 PHKA2P46019 1235 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 GPC3P51654 580 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 CACNB2Q08289 660 aaPredicted RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 MEA1Q16626 185 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 SMTNL2Q2TAL5 461 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 MMS22LQ6ZRQ5 1243 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 HEXIM2Q96MH2 286 aaKnown RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 ALS2CR12Q96Q35 445 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 PNKPQ96T60 521 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 KRT12Q99456 494 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 STK33Q9BYT3 514 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 DDX47Q9H0S4 455 aaKnown RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 SLC5A4Q9NY91 659 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 NR2E1Q9Y466 385 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 RGPD3A6NKT7 1758 aaPredicted RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 RGPD4Q7Z3J3 1758 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 CASTOR2A6NHX0 329 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 ZSCAN20P17040 1043 aaPredicted RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 KCNJ1P48048 391 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 PDE6CP51160 858 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 DYNLT1P63172 113 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 LACTBP83111 547 aaPredicted RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 KCNT1Q5JUK3 1230 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 MARCH8Q5T0T0 291 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 C17orf99Q6UX52 265 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 LMO3Q8TAP4 145 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 TAF4BQ92750 862 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 KRT35Q92764 455 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 KAT2BQ92831 832 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 AGPAT1Q99943 283 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 ADAM33Q9BZ11 813 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 CELF4Q9BZC1 486 aaKnown RBP11.3□□□□□ -0.6
VPS11-208ENST00000621676 TRPV6Q9H1D0 765 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 DPH5Q9H2P9 285 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms