RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GRB10Q13322 594 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SLC29A2Q14542 456 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 RNF168Q8IYW5 571 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SCG3Q8WXD2 468 aaKnown RBP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 ATXN7L3BQ96GX2 97 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SIK2Q9H0K1 926 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 PSD3Q9NYI0 1048 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 ZFATQ9P243 1243 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 USP15Q9Y4E8 981 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 ORC6Q9Y5N6 252 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 PRKCBP05771 671 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 PDGFRAP16234 1089 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 TRAPPC11Q7Z392 1133 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 CDKL3Q8IVW4 592 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 TIPINQ9BVW5 301 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 CARD9Q9H257 536 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 RAB6BQ9NRW1 208 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 DONSONQ9NYP3 566 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 NEU2Q9Y3R4 380 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 POLRMTO00411 1230 aaKnown RBP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 CSPG5O95196 566 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 PPP4CP60510 307 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 TTC39CQ8N584 583 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SYN2Q92777 582 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-212ENST00000616140 ENTPD3O75355 529 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 COG2Q14746 738 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SEC23AQ15436 765 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 EFHC2Q5JST6 749 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 RGS9BPQ6ZS82 235 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SEC16BQ96JE7 1060 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 SENP7Q9BQF6 1050 aa14.8□□□□□ -0.04
CPSF1-212ENST00000616140 TMEM120BA0PK00 339 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 SLC10A5Q5PT55 438 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 RCOR2Q8IZ40 523 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 OR6P1Q8NGX9 317 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 ABCF3Q9NUQ8 709 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 SUCLA2Q9P2R7 463 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-212ENST00000616140 ADAMTS13Q76LX8 1427 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 SYDE1Q6ZW31 735 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-212ENST00000616140 MCEEQ96PE7 176 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 RIT2Q99578 217 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 PI4K2AQ9BTU6 479 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 SMG5Q9UPR3 1016 aaKnown RBP14.79□□□□□ -0.04
CPSF1-212ENST00000616140 PPME1Q9Y570 386 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 CD163L1Q9NR16 1453 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 ASAP2O43150 1006 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 KCNA4P22459 653 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 KDSRQ06136 332 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 DRP2Q13474 957 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 CDKAL1Q5VV42 579 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 WDR93Q6P2C0 686 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 DAGLBQ8NCG7 672 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 SLC26A7Q8TE54 656 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 IL17RAQ96F46 866 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 GJD4Q96KN9 370 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-212ENST00000616140 CENPKQ9BS16 269 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 OSBPL1AQ9BXW6 950 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 WWP1Q9H0M0 922 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 NDE1Q9NXR1 346 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 AGAP1Q9UPQ3 857 aa14.79□□□□□ -0.04
CPSF1-212ENST00000616140 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.79□□□□□ -0.04
CPSF1-212ENST00000616140 RSPH10B2B2RC85 870 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 KIAA0391O15091 583 aaKnown RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 KCNN4O15554 427 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 ATP9BO43861 1147 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 HLA-DRAP01903 254 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 RSPH10BP0C881 870 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 AGBL2Q5U5Z8 902 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 PDCD6IPQ8WUM4 868 aaKnown RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 PRPF31Q8WWY3 499 aaKnown RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 LPAR1Q92633 364 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 SGSM3Q96HU1 749 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 KIF9Q9HAQ2 790 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 AGPAT3Q9NRZ7 376 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 FAM47DPA6NHR8 397 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 CCDC22O60826 627 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 FAM107AO95990 144 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 RGS7P49802 495 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 KLF6Q99612 283 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 SLC24A3Q9HC58 644 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 ADA2Q9NZK5 511 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 SNX9Q9Y5X1 595 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 EIF3DO15371 548 aaKnown RBP eCLIP14.78□□□□□ -0.045e-6■■■□□ 17.2
CPSF1-212ENST00000616140 FOXP2O15409 715 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 ZBTB7AO95365 584 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 MOCS2O96007 188 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 TRIM65Q6PJ69 517 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 BARGINQ6ZT62 677 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 TPCN2Q8NHX9 752 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 ABTB1Q969K4 478 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 ERP27Q96DN0 273 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 THAP2Q9H0W7 228 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 KCNH7Q9NS40 1196 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 TRIM33Q9UPN9 1127 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 MYL3P08590 195 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 HSD17B3P37058 310 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 LRRC31Q6UY01 552 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 RNF135Q8IUD6 432 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms