RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TMEM169Q96HH4 297 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 DRC1Q96MC2 740 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 GSDMAQ96QA5 445 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 MRPL9Q9BYD2 267 aaKnown RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 CCDC113Q9H0I3 377 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 CXCL16Q9H2A7 254 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 FZD8Q9H461 694 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 RSAD1Q9HA92 442 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 PANK4Q9NVE7 773 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 MARCH5Q9NX47 278 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 KIAA1468Q9P260 1216 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 CACNG4Q9UBN1 327 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 SEL1LQ9UBV2 794 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 USP20Q9Y2K6 914 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 IPPQ9Y573 584 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 R4GN57 208 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 GVINP1Q7Z2Y8 2422 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 NRP1O14786 923 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 TRAK2O60296 914 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 KINO60870 393 aaKnown RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 LILRB3O75022 631 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 SKIP12755 728 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 NPR3P17342 541 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 ARF4P18085 180 aaPredicted RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 NMT1P30419 496 aaKnown RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 RAB27AP51159 221 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 CLCN5P51795 746 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 PEX3P56589 373 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 GTF2BQ00403 316 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 RNASELQ05823 741 aaKnown RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 STK4Q13043 487 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 PUM1Q14671 1186 aaKnown RBP eCLIP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 PTPN14Q15678 1187 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 CAMK4Q16566 473 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 RARS2Q5T160 578 aaKnown RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 SFR1Q86XK3 245 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 CCDC105Q8IYK2 499 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 COLGALT2Q8IYK4 626 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 DCLK2Q8N568 766 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 KIAA0895Q8NCT3 520 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 GSTCDQ8NEC7 633 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 RABGGTAQ92696 567 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 ZFP42Q96MM3 310 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 GAD1Q99259 594 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 NXF3Q9H4D5 531 aaKnown RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 TMEM134Q9H6X4 195 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 PARVGQ9HBI0 331 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 LARSQ9P2J5 1176 aaKnown RBP9.59□□□□□ -0.87
TRIM28-214ENST00000600840 NR2E1Q9Y466 385 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 DENND4AQ7Z401 1863 aa9.59□□□□□ -0.87
TRIM28-214ENST00000600840 INO80B-WBP1J3KQ70 363 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 ABLIM1O14639 778 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 SLC16A4O15374 487 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 EFEMP2O95967 443 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 LMNAP02545 664 aaKnown RBP9.58□□□□□ -0.88
TRIM28-214ENST00000600840 CNPP09543 421 aaKnown RBP9.58□□□□□ -0.88
TRIM28-214ENST00000600840 MYBP10242 640 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 ITGA4P13612 1032 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 IDEP14735 1019 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 GAP43P17677 238 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 AKAP5P24588 427 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 MLH1P40692 756 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 SCNN1GP51170 649 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 ASIC1P78348 528 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 KCNA1Q09470 495 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 PSMD2Q13200 908 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 MORC3Q14149 939 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 FAM187BQ17R55 369 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 ZC2HC1CQ53FD0 456 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-214ENST00000600840 COBLL1Q53SF7 1204 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 PPP4R3CPQ6ZMV5 832 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 HAUS6Q7Z4H7 955 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 CCDC65Q8IXS2 484 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 MYCT1Q8N699 235 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 DTWD2Q8NBA8 298 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 ZNF507Q8TCN5 953 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 CASP10Q92851 521 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 PGBD4Q96DM1 585 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 KLHL5Q96PQ7 755 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 MED15Q96RN5 788 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 HINFPQ9BQA5 517 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 KIFC3Q9BVG8 833 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 APOL6Q9BWW8 343 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 IKZF4Q9H2S9 585 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 ADAM7Q9H2U9 754 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 LIMD1Q9UGP4 676 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 KCNG1Q9UIX4 513 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 MAN1B1Q9UKM7 699 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 FAN1Q9Y2M0 1017 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 PRG3Q9Y2Y8 225 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-214ENST00000600840 IRAK3Q9Y616 596 aa9.58□□□□□ -0.88
TRIM28-214ENST00000600840 TRIP11Q15643 1979 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 FANCMQ8IYD8 2048 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 DOCK6Q96HP0 2047 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 ARL5CA6NH57 179 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 ACKR2O00590 384 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 INPPL1O15357 1258 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 ERLIN2O94905 339 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms