RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TCF25Q9BQ70 676 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 GPR62Q9BZJ7 368 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 TUBGCP4Q9UGJ1 667 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 GOLGA6L4A6NEF3 574 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 TMEM189-UBE2V1I3L0A0 370 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 CTSAP10619 480 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 CLCNKBP51801 687 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 POU5F1Q01860 360 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 KRT17Q04695 432 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 SPAG1Q07617 926 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 KCNC3Q14003 757 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 HSP90AA2PQ14568 343 aaPredicted RBP21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 KYAT1Q16773 422 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 VPS52Q8N1B4 723 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 SAAL1Q96ER3 474 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 HERC2P3Q9BVR0 1158 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 KCTD10Q9H3F6 313 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 AGPAT3Q9NRZ7 376 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 CHST7Q9NS84 486 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 EXOC1Q9NV70 894 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 IRAK3Q9Y616 596 aa21.24■□□□□ 0.99
SHKBP1-221ENST00000599833 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 C2orf71A6NGG8 1288 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 PLPP4Q5VZY2 271 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 PDE12Q6L8Q7 609 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 KANK3Q6NY19 840 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 NELFCDQ8IXH7 590 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 C12orf56Q8IXR9 622 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 MRPL43Q8N983 215 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 VN1R2Q8NFZ6 395 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 TMEM174Q8WUU8 243 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 AUTS2Q8WXX7 1259 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 ERCC4Q92889 916 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 FBXL18Q96ME1 805 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 ADAM28Q9UKQ2 775 aa21.23■□□□□ 0.99
SHKBP1-221ENST00000599833 SCN1AP35498 2009 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 GLP2RO95838 553 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 SOD2P04179 222 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 NFICP08651 508 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 LTBRP36941 435 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 UBE2HP62256 183 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 PTPN14Q15678 1187 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 KNOP1Q1ED39 458 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 FUT10Q6P4F1 479 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 STXBP4Q6ZWJ1 553 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 BRSK2Q8IWQ3 736 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 EFCAB13Q8IY85 973 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 SYCP3Q8IZU3 236 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 FAM213AQ9BRX8 229 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 COLEC11Q9BWP8 271 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 PCIF1Q9H4Z3 704 aa21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 RPF1Q9H9Y2 349 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 NGRNQ9NPE2 291 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 PUF60Q9UHX1 559 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-221ENST00000599833 GOLGA8IPA6NC78 632 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 GOLGA8JA6NMD2 632 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 LINC01565O15544 149 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 LRPAP1P30533 357 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 DUSP6Q16828 381 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 KIAA0319Q5VV43 1072 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 JADE1Q6IE81 842 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 HASPINQ8TF76 798 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 UROC1Q96N76 676 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 GZF1Q9H116 711 aaPredicted RBP21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 HSPBP1Q9NZL4 362 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 PLXNA3P51805 1871 aa21.21■□□□□ 0.99
SHKBP1-221ENST00000599833 PODXLO00592 558 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 PER2O15055 1255 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 EXTL3O43909 919 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 PRPF40AO75400 957 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 GUCY2FP51841 1108 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 SNRPFP62306 86 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 RBM10P98175 930 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 PPP2R3AQ06190 1150 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 DLX2Q07687 328 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 SCARA3Q6AZY7 606 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 ARMCX5Q6P1M9 558 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 DCLRE1AQ6PJP8 1040 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 TMC7Q7Z402 723 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 CD302Q8IX05 232 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 CXorf38Q8TB03 319 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 KIF12Q96FN5 646 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 B3GALT6Q96L58 329 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 ASB7Q9H672 318 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 ENTPD7Q9NQZ7 604 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 SLC38A7Q9NVC3 462 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 DMAC2Q9NW81 257 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 PCDHA5Q9Y5H7 936 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 TSC2P49815 1807 aa21.2■□□□□ 0.98
SHKBP1-221ENST00000599833 PPEF2O14830 753 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 CLIC2O15247 247 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 TBX10O75333 385 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 CYP3A5P20815 502 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 NRIP1P48552 1158 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 DSG1Q02413 1049 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 ADAM15Q13444 863 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 SMC1AQ14683 1233 aaKnown RBP21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 RTP2Q5QGT7 225 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 SPATA1Q5VX52 437 aa21.19■□□□□ 0.98
SHKBP1-221ENST00000599833 CBWD2Q8IUF1 395 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms