RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PTPROQ16827 1216 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 JADE1Q6IE81 842 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 ARMCX5Q6P1M9 558 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 CBWD2Q8IUF1 395 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 VPS52Q8N1B4 723 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 TMEM169Q96HH4 297 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 B3GALT6Q96L58 329 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 ZBP1Q9H171 429 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 TLR9Q9NR96 1032 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 HSPBP1Q9NZL4 362 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 MAN1B1Q9UKM7 699 aa15.46■□□□□ 0.07
SHKBP1-217ENST00000598558 UBE4BO95155 1302 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 PPEF2O14830 753 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 EXTL3O43909 919 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 LILRB3O75022 631 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 NFICP08651 508 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 HYAL1Q12794 435 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 CAMK4Q16566 473 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 KYAT1Q16773 422 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 UPP1Q16831 310 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 PLPP4Q5VZY2 271 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 EFCAB13Q8IY85 973 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 RDH13Q8NBN7 331 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 KIF12Q96FN5 646 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 FBXL18Q96ME1 805 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 GSDMAQ96QA5 445 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 TCF25Q9BQ70 676 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 COLEC11Q9BWP8 271 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 GZF1Q9H116 711 aaPredicted RBP15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 DMAC2Q9NW81 257 aa15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 PUF60Q9UHX1 559 aaKnown RBP15.45■□□□□ 0.06
SHKBP1-217ENST00000598558 RALGAPA2Q2PPJ7 1873 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 NLRC5Q86WI3 1866 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 I3L4J1 428 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 PER2O15055 1255 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 CXCL14O95715 111 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 CD44P16070 742 aaKnown RBP15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 PRCPP42785 496 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 BRCC3P46736 316 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 CYP2J2P51589 502 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 RBM10P98175 930 aaKnown RBP15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 PPP2R3AQ06190 1150 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 FUT10Q6P4F1 479 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 TMC7Q7Z402 723 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 RBM23Q86U06 439 aaKnown RBP15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 BRSK2Q8IWQ3 736 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 GPD1LQ8N335 351 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 MRPL43Q8N983 215 aaKnown RBP15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 GPT2Q8TD30 523 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 PLEKHO2Q8TD55 490 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 MICAL1Q8TDZ2 1067 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 NOC3LQ8WTT2 800 aaKnown RBP15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 SMARCE1Q969G3 411 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 NSUN3Q9H649 340 aaKnown RBP15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 PDE11AQ9HCR9 933 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 ADAM28Q9UKQ2 775 aa15.44■□□□□ 0.06
SHKBP1-217ENST00000598558 PTPRJQ12913 1337 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 PRRC2BQ5JSZ5 2229 aaKnown RBP15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 C2orf71A6NGG8 1288 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 PODXLO00592 558 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 LINC01565O15544 149 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 TADA2AO75478 443 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 LDHAP00338 332 aaKnown RBP15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 CTSAP10619 480 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 CASP4P49662 377 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 POU5F1Q01860 360 aaKnown RBP15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 ZCWPW2Q504Y3 356 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 KIAA0319Q5VV43 1072 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 SPATA1Q5VX52 437 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 DCLRE1AQ6PJP8 1040 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 C12orf56Q8IXR9 622 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 GUF1Q8N442 669 aaKnown RBP15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 VN1R2Q8NFZ6 395 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 CCDC47Q96A33 483 aaKnown RBP15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 IGFLR1Q9H665 355 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 ASB7Q9H672 318 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 CHST7Q9NS84 486 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 RBAKQ9NYW8 714 aaPredicted RBP15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 PLXNA4Q9HCM2 1894 aa15.43■□□□□ 0.06
SHKBP1-217ENST00000598558 TMEM189-UBE2V1I3L0A0 370 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 BIN1O00499 593 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 PDXKO00764 312 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 B3GAT3O94766 335 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 SMC2O95347 1197 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 SOD2P04179 222 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 LRPAP1P30533 357 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 NRIP1P48552 1158 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 PMS1P54277 932 aaKnown RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 SNRPFP62306 86 aaKnown RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 MORC3Q14149 939 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 COL19A1Q14993 1142 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 PTPN14Q15678 1187 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 TIGD5Q53EQ6 642 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 ZNF658Q5TYW1 1059 aaPredicted RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 LMBRD2Q68DH5 695 aaPredicted RBP15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 HS2ST1Q7LGA3 356 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 CD302Q8IX05 232 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 XXYLT1Q8NBI6 393 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 CXorf38Q8TB03 319 aa15.42■□□□□ 0.06
SHKBP1-217ENST00000598558 CCDC34Q96HJ3 373 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms