RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PTPN2P17706 415 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 GLRA2P23416 452 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 PMLP29590 882 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 SHC2P98077 582 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 SATB1Q01826 763 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 SSRP1Q08945 709 aaKnown RBP11.21□□□□□ -0.61
TRIM28-210ENST00000597618 SPIRE1Q08AE8 756 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 CTTNQ14247 550 aaKnown RBP11.21□□□□□ -0.61
TRIM28-210ENST00000597618 GRM2Q14416 872 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 BMP2KLQ5H9B9 411 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 PPP4R3CPQ6ZMV5 832 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 ANKS3Q6ZW76 656 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 NEK8Q86SG6 692 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 NAP1L4Q99733 375 aaKnown RBP11.21□□□□□ -0.61
TRIM28-210ENST00000597618 AGXT2Q9BYV1 514 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 LMAN1LQ9HAT1 526 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 NCOA5Q9HCD5 579 aaKnown RBP11.21□□□□□ -0.61
TRIM28-210ENST00000597618 PRMT7Q9NVM4 692 aaPredicted RBP11.21□□□□□ -0.61
TRIM28-210ENST00000597618 BACE2Q9Y5Z0 518 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 PIAS3Q9Y6X2 628 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 SPEGQ15772 3267 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 CCDC194A0A1B0GVG4 234 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 ARHGEF37A1IGU5 675 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 PRRG1O14668 218 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 ZNF197O14709 1029 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 TRAPPC3O43617 180 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 GDF9O60383 454 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 RECQL4O94761 1208 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 PAPSS2O95340 614 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-210ENST00000597618 PSMC3P17980 439 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 RPS6KB1P23443 525 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 PDIA3P30101 505 aaKnown RBP11.2□□□□□ -0.62
TRIM28-210ENST00000597618 RBM25P49756 843 aaKnown RBP11.2□□□□□ -0.62
TRIM28-210ENST00000597618 LIMK1P53667 647 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 EVCP57679 992 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 CCT2P78371 535 aaKnown RBP11.2□□□□□ -0.62
TRIM28-210ENST00000597618 LRRC32Q14392 662 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 NAB2Q15742 525 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 NPY5RQ15761 445 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 FAM78AQ5JUQ0 283 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 PRSS36Q5K4E3 855 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 C1orf228Q6PIY5 440 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 LONP2Q86WA8 852 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 MAP4K3Q8IVH8 894 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 TPH2Q8IWU9 490 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 SPEM1Q8N4L4 309 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 DEPDC1BQ8WUY9 529 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 HAS1Q92839 578 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 MSANTD3Q96H12 275 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 ASB16Q96NS5 453 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 POLR3FQ9H1D9 316 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-210ENST00000597618 ZNF334Q9HCZ1 680 aaPredicted RBP11.2□□□□□ -0.62
TRIM28-210ENST00000597618 SNTG2Q9NY99 539 aa11.2□□□□□ -0.62
TRIM28-210ENST00000597618 NOTCH4Q99466 2003 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 LRRIQ4A6NIV6 560 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 CHURC1-FNTBB4DL54 471 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 CPLX1O14810 134 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 N4BP3O15049 544 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 HRO43593 1189 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 CCNT1O60563 726 aaKnown RBP11.19□□□□□ -0.62
TRIM28-210ENST00000597618 B3GAT3O94766 335 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 LYPLA2O95372 231 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 GDI1P31150 447 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 ELF1P32519 619 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 FNTBP49356 437 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 MLLT6P55198 1093 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-210ENST00000597618 TMEM132AQ24JP5 1023 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 AASDHQ4L235 1098 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-210ENST00000597618 SLC8B1Q6J4K2 584 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 POTEHQ6S545 545 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 PDZD4Q76G19 769 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-210ENST00000597618 ZBTB8OSQ8IWT0 167 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 SLFN12Q8IYM2 578 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 ZNF461Q8TAF7 563 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 SMARCD2Q92925 531 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 KCNB2Q92953 911 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 UROC1Q96N76 676 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 CORO1BQ9BR76 489 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 ADPGKQ9BRR6 497 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 PDZD7Q9H5P4 517 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 ANKEF1Q9NU02 776 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 ARID2Q68CP9 1835 aa11.19□□□□□ -0.62
TRIM28-210ENST00000597618 IGF2RP11717 2491 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 WDR27A2RRH5 827 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 ZNF263O14978 683 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 SLITRK3O94933 977 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 BAG4O95429 457 aaKnown RBP11.18□□□□□ -0.62
TRIM28-210ENST00000597618 CHRNB1P11230 501 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 TKTP29401 623 aaKnown RBP11.18□□□□□ -0.62
TRIM28-210ENST00000597618 RARRES1P49788 294 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 ROR1Q01973 937 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 SRSF5Q13243 272 aaKnown RBP11.18□□□□□ -0.62
TRIM28-210ENST00000597618 PTGDRQ13258 359 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 FAM187BQ17R55 369 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 N4BP2L1Q5TBK1 243 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-210ENST00000597618 CYP4A22Q5TCH4 519 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 CDCA2Q69YH5 1023 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-210ENST00000597618 VITQ6UXI7 678 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 CEP68Q76N32 757 aa11.18□□□□□ -0.62
TRIM28-210ENST00000597618 POTEDQ86YR6 584 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms