RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NRIP1P48552 1158 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 EFNA5P52803 228 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 CRYBB1P53674 252 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-208ENST00000597172 MGAT3Q09327 533 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 MBTPS1Q14703 1052 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 AMHR2Q16671 573 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 SPATA1Q5VX52 437 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 CWF19L1Q69YN2 538 aaKnown RBP10.32□□□□□ -0.76
TRIM28-208ENST00000597172 ZC3H14Q6PJT7 736 aaKnown RBP10.32□□□□□ -0.76
TRIM28-208ENST00000597172 STXBP4Q6ZWJ1 553 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 ADGRD2Q7Z7M1 963 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 RBM23Q86U06 439 aaKnown RBP10.32□□□□□ -0.76
TRIM28-208ENST00000597172 LUZP1Q86V48 1076 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 AOPEPQ8N6M6 819 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 RNF214Q8ND24 703 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 TMEM40Q8WWA1 233 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 NLRP7Q8WX94 980 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 HVCN1Q96D96 273 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 OSMRQ99650 979 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 RTP3Q9BQQ7 232 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 CELF4Q9BZC1 486 aaKnown RBP10.32□□□□□ -0.76
TRIM28-208ENST00000597172 C2orf40Q9H1Z8 148 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 SMOC2Q9H3U7 446 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 TRAF3IP3Q9Y228 551 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 EVPLQ92817 2033 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 FRYQ5TBA9 3013 aa10.32□□□□□ -0.76
TRIM28-208ENST00000597172 FSD2A1L4K1 749 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ACKR2O00590 384 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 CLIC2O15247 247 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 PIGRP01833 764 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 DARSP14868 501 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 FGFR4P22455 802 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 EIF4BP23588 611 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ADSSP30520 456 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 THPOP40225 353 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 MRPS6P82932 125 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 FAM187BQ17R55 369 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 FAM26DQ5JW98 314 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ZNF618Q5T7W0 954 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 FOXR2Q6PJQ5 311 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 TRAF7Q6Q0C0 670 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 SRGAP1Q7Z6B7 1085 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 IRF2BP1Q8IU81 584 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ZBTB8OSQ8IWT0 167 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ZC3H3Q8IXZ2 948 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 SYCP3Q8IZU3 236 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ZNF710Q8N1W2 664 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 GPR161Q8N6U8 529 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ZBTB45Q96K62 511 aaPredicted RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 ACO2Q99798 780 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 TARS2Q9BW92 718 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 SRRTQ9BXP5 876 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 IFIH1Q9BYX4 1025 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 GCOM2Q9BZD3 368 aaPredicted RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 HAPLN2Q9GZV7 340 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 GBP3Q9H0R5 595 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 TMEM206Q9H813 350 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 SAMSN1Q9NSI8 373 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 TYW1Q9NV66 732 aaKnown RBP10.31□□□□□ -0.76
TRIM28-208ENST00000597172 FANCLQ9NW38 375 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 DMAC2Q9NW81 257 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 PLAGL2Q9UPG8 496 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 GINS2Q9Y248 185 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 NR2E1Q9Y466 385 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 CDY2AQ9Y6F7 541 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 STYXL1Q9Y6J8 313 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 KAT6AQ92794 2004 aa10.31□□□□□ -0.76
TRIM28-208ENST00000597172 FANCMQ8IYD8 2048 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 BICDL2A1A5D9 508 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 SMTNL1A8MU46 457 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 INO80B-WBP1J3KQ70 363 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 ABLIM1O14639 778 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 B4GALT5O43286 388 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 CALUO43852 315 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-208ENST00000597172 RPLP2P05387 115 aaKnown RBP10.3□□□□□ -0.76
TRIM28-208ENST00000597172 PRKCBP05771 671 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 CTSHP09668 335 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 ABCD1P33897 745 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 MYL5Q02045 173 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 LMNB2Q03252 620 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 LRRC63Q05C16 580 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 STRN3Q13033 797 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 GSE1Q14687 1217 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 NFIL3Q16649 462 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 MAPK6Q16659 721 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 EDRF1Q3B7T1 1238 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 PPM1JQ5JR12 505 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 PPP4R3CPQ6ZMV5 832 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 LRRC55Q6ZSA7 311 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 TSHZ1Q6ZSZ6 1077 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 RSPH3Q86UC2 560 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 SUMF1Q8NBK3 374 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 ZSWIM2Q8NEG5 633 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 TMEM174Q8WUU8 243 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 EEF2KMTQ96G04 330 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 PLVAPQ9BX97 442 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 INO80BQ9C086 356 aaPredicted RBP10.3□□□□□ -0.76
TRIM28-208ENST00000597172 PTPRHQ9HD43 1115 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 AGPAT3Q9NRZ7 376 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 ANGPTL2Q9UKU9 493 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms