RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 LYPLA2O95372 231 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 THP07101 528 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 RETP07949 1114 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 IGFBP6P24592 240 aaPredicted RBP12.22□□□□□ -0.45
VPS4B-202ENST00000588059 NRLP54845 237 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 GRM2Q14416 872 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 PPP4R3CPQ6ZMV5 832 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 RTL10Q7L3V2 364 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 TPH2Q8IWU9 490 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 CELF5Q8N6W0 485 aaKnown RBP12.22□□□□□ -0.45
VPS4B-202ENST00000588059 CDY1Q9Y6F8 540 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 CNOT1A5YKK6 2376 aaKnown RBP12.22□□□□□ -0.45
VPS4B-202ENST00000588059 GREB1Q4ZG55 1949 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 LRRIQ4A6NIV6 560 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 TMEM189-UBE2V1I3L0A0 370 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 MAN2B1O00754 1011 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 NRG2O14511 850 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-202ENST00000588059 CCR3P51677 355 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 TOB2Q14106 344 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PPP2R5DQ14738 602 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PRSS36Q5K4E3 855 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PRR23CQ6ZRP0 262 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PRR23BQ6ZRT6 265 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 DDX27Q96GQ7 796 aaKnown RBP12.21□□□□□ -0.45
VPS4B-202ENST00000588059 CHAMP1Q96JM3 812 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PRIMPOLQ96LW4 560 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 EIF2AK1Q9BQI3 630 aaKnown RBP12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PDZD7Q9H5P4 517 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 BRD9Q9H8M2 597 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 SEMA4GQ9NTN9 838 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 ANKEF1Q9NU02 776 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 PRMT7Q9NVM4 692 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-202ENST00000588059 SNTG2Q9NY99 539 aa12.21□□□□□ -0.45
VPS4B-202ENST00000588059 ARHGEF37A1IGU5 675 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 CPLX1O14810 134 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 MARCH6O60337 910 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 GDF9O60383 454 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 REC8O95072 547 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 TKTP29401 623 aaKnown RBP12.2□□□□□ -0.46
VPS4B-202ENST00000588059 RARRES1P49788 294 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 CSRP2Q16527 193 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 FAM187BQ17R55 369 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 FAM78AQ5JUQ0 283 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 CDCA2Q69YH5 1023 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-202ENST00000588059 CD300LGQ6UXG3 332 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 PIK3AP1Q6ZUJ8 805 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 MAP4K3Q8IVH8 894 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 SLFN12Q8IYM2 578 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 OXER1Q8TDS5 423 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 TCEAL4Q96EI5 215 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 NAP1L4Q99733 375 aaKnown RBP12.2□□□□□ -0.46
VPS4B-202ENST00000588059 HSD17B14Q9BPX1 270 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 TRMT61BQ9BVS5 477 aaKnown RBP12.2□□□□□ -0.46
VPS4B-202ENST00000588059 FZD8Q9H461 694 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 LMAN1LQ9HAT1 526 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 ZFP14Q9HCL3 533 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 GPRC5CQ9NQ84 441 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 BACE2Q9Y5Z0 518 aa12.2□□□□□ -0.46
VPS4B-202ENST00000588059 FAM205CA6NFA0 338 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 I3L4J1 428 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 N4BP3O15049 544 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 USO1O60763 962 aaKnown RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 B3GAT3O94766 335 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 PTPN2P17706 415 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 PSMA5P28066 241 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 CCR2P41597 374 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 RBM25P49756 843 aaKnown RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 SATB1Q01826 763 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 ROR1Q01973 937 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 DMWDQ09019 674 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 SRSF5Q13243 272 aaKnown RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 SIM2Q14190 667 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 GAS6Q14393 721 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 EARS2Q5JPH6 523 aaKnown RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 GLRA4Q5JXX5 417 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 VITQ6UXI7 678 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 ANKS3Q6ZW76 656 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 NOSTRINQ8IVI9 506 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 PIGOQ8TEQ8 1089 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 FAM3CQ92520 227 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 IRF7Q92985 503 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 CCDC43Q96MW1 224 aaKnown RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 ASB16Q96NS5 453 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 CORO1BQ9BR76 489 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 ZNF334Q9HCZ1 680 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-202ENST00000588059 TRPV5Q9NQA5 729 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 PIAS3Q9Y6X2 628 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 SPAG17Q6Q759 2223 aa12.19□□□□□ -0.46
VPS4B-202ENST00000588059 NCANO14594 1321 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 A0A087WWV3 80 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 WDR27A2RRH5 827 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 CHURC1-FNTBB4DL54 471 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 HRO43593 1189 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 BAG4O95429 457 aaKnown RBP12.18□□□□□ -0.46
VPS4B-202ENST00000588059 LRG1P02750 347 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 EDN1P05305 212 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 CHRNB1P11230 501 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 GDI1P31150 447 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 CXCL12P48061 93 aa12.18□□□□□ -0.46
VPS4B-202ENST00000588059 FNTBP49356 437 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms