RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TDRD15B5MCY1 1934 aaKnown RBP14.09□□□□□ -0.15
SS18-219ENST00000581570 GDF9O60383 454 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 LRG1P02750 347 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 FCARP24071 287 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 CXCL12P48061 93 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 EVCP57679 992 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 SPIRE1Q08AE8 756 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 NAB2Q15742 525 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 DDX1Q92499 740 aaKnown RBP14.09□□□□□ -0.15
SS18-219ENST00000581570 IRF7Q92985 503 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 CCDC43Q96MW1 224 aaKnown RBP14.09□□□□□ -0.15
SS18-219ENST00000581570 AIFM3Q96NN9 605 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 POLR3FQ9H1D9 316 aaPredicted RBP14.09□□□□□ -0.15
SS18-219ENST00000581570 CXCL16Q9H2A7 254 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 ZNF334Q9HCZ1 680 aaPredicted RBP14.09□□□□□ -0.15
SS18-219ENST00000581570 ANKEF1Q9NU02 776 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 PRMT7Q9NVM4 692 aaPredicted RBP14.09□□□□□ -0.15
SS18-219ENST00000581570 ANGPTL2Q9UKU9 493 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 KCNJ14Q9UNX9 436 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 BACE2Q9Y5Z0 518 aa14.09□□□□□ -0.15
SS18-219ENST00000581570 LRRIQ4A6NIV6 560 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 CHURC1-FNTBB4DL54 471 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 CPLX1O14810 134 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 HRO43593 1189 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 FOXD2O60548 495 aaPredicted RBP14.08□□□□□ -0.16
SS18-219ENST00000581570 RECQL4O94761 1208 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 B3GAT3O94766 335 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 LYPLA2O95372 231 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 BAG4O95429 457 aaKnown RBP14.08□□□□□ -0.16
SS18-219ENST00000581570 GDI1P31150 447 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 ELF1P32519 619 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 FNTBP49356 437 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 SATB1Q01826 763 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 TMEM132AQ24JP5 1023 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 FAM78AQ5JUQ0 283 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.08□□□□□ -0.16
SS18-219ENST00000581570 MAP4K3Q8IVH8 894 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 PRIMPOLQ96LW4 560 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 NAP1L4Q99733 375 aaKnown RBP14.08□□□□□ -0.16
SS18-219ENST00000581570 EIF2AK1Q9BQI3 630 aaKnown RBP14.08□□□□□ -0.16
SS18-219ENST00000581570 CORO1BQ9BR76 489 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 PIAS3Q9Y6X2 628 aa14.08□□□□□ -0.16
SS18-219ENST00000581570 ARHGEF37A1IGU5 675 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 TMEM189-UBE2V1I3L0A0 370 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 PRRG1O14668 218 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 ZNF197O14709 1029 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 N4BP3O15049 544 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 CHRNB1P11230 501 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 IGFBP6P24592 240 aaPredicted RBP14.07□□□□□ -0.16
SS18-219ENST00000581570 PSMA5P28066 241 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 TKTP29401 623 aaKnown RBP14.07□□□□□ -0.16
SS18-219ENST00000581570 CNR2P34972 360 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 DMWDQ09019 674 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 SRSF5Q13243 272 aaKnown RBP14.07□□□□□ -0.16
SS18-219ENST00000581570 PRSS36Q5K4E3 855 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 IL31Q6EBC2 164 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 ANKS3Q6ZW76 656 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 MAEAQ7L5Y9 396 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 NOSTRINQ8IVI9 506 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 SLFN12Q8IYM2 578 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 TCEAL4Q96EI5 215 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 DDX27Q96GQ7 796 aaKnown RBP14.07□□□□□ -0.16
SS18-219ENST00000581570 ASB16Q96NS5 453 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 FZD8Q9H461 694 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 PDZD7Q9H5P4 517 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 TRPV5Q9NQA5 729 aa14.07□□□□□ -0.16
SS18-219ENST00000581570 RALYQ9UKM9 306 aaKnown RBP14.07□□□□□ -0.16
SS18-219ENST00000581570 A0A087WWV3 80 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 TTLL13PA6NNM8 815 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 NRG2O14511 850 aaPredicted RBP14.06□□□□□ -0.16
SS18-219ENST00000581570 TRAPPC3O43617 180 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 CDC45O75419 566 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 MICAL2O94851 1124 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 PSMC3P17980 439 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 CCNE1P24864 410 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 PMLP29590 882 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 HSPA4P34932 840 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 RARRES1P49788 294 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 IRX6P78412 446 aaPredicted RBP14.06□□□□□ -0.16
SS18-219ENST00000581570 GAS6Q14393 721 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 FAM187BQ17R55 369 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 N4BP2L1Q5TBK1 243 aaPredicted RBP14.06□□□□□ -0.16
SS18-219ENST00000581570 CPLX2Q6PUV4 134 aaKnown RBP14.06□□□□□ -0.16
SS18-219ENST00000581570 VITQ6UXI7 678 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 PIK3AP1Q6ZUJ8 805 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 PDZD4Q76G19 769 aaPredicted RBP14.06□□□□□ -0.16
SS18-219ENST00000581570 LONP2Q86WA8 852 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 ZBTB8OSQ8IWT0 167 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 SPEM1Q8N4L4 309 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 ZNF461Q8TAF7 563 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 YTHDC1Q96MU7 727 aaKnown RBP14.06□□□□□ -0.16
SS18-219ENST00000581570 HSD17B14Q9BPX1 270 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 ADPGKQ9BRR6 497 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 GPRC5CQ9NQ84 441 aa14.06□□□□□ -0.16
SS18-219ENST00000581570 NOTCH4Q99466 2003 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 WDR27A2RRH5 827 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 I3L4J1 428 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 ZNF263O14978 683 aa14.05□□□□□ -0.16
SS18-219ENST00000581570 USO1O60763 962 aaKnown RBP14.05□□□□□ -0.16
SS18-219ENST00000581570 ABLIM3O94929 683 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms