RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 RAB33AQ14088 237 aa17.07■□□□□ 0.32
NME3-211ENST00000568561 PABPC1LQ4VXU2 614 aaKnown RBP17.07■□□□□ 0.32
NME3-211ENST00000568561 HAUS3Q68CZ6 603 aa17.07■□□□□ 0.32
NME3-211ENST00000568561 NPAS3Q8IXF0 933 aa17.07■□□□□ 0.32
NME3-211ENST00000568561 DNMT3BQ9UBC3 853 aaKnown RBP17.07■□□□□ 0.32
NME3-211ENST00000568561 KIAA1024Q9UPX6 916 aa17.07■□□□□ 0.32
NME3-211ENST00000568561 MYH11P35749 1972 aa17.07■□□□□ 0.32
NME3-211ENST00000568561 CCDC169A6NNP5 214 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 TMEM189-UBE2V1I3L0A0 370 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 LMNAP02545 664 aaKnown RBP17.06■□□□□ 0.32
NME3-211ENST00000568561 SP9P0CG40 484 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 ID4P47928 161 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 EFNA5P52803 228 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 GNL2Q13823 731 aaKnown RBP17.06■□□□□ 0.32
NME3-211ENST00000568561 UPP1Q16831 310 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 SLC5A9Q2M3M2 681 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 PDXDC1Q6P996 788 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 MTSS1LQ765P7 747 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 CDT1Q9H211 546 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 FOXP1Q9H334 677 aaPredicted RBP17.06■□□□□ 0.32
NME3-211ENST00000568561 DDX19AQ9NUU7 478 aaKnown RBP17.06■□□□□ 0.32
NME3-211ENST00000568561 LRWD1Q9UFC0 647 aa17.06■□□□□ 0.32
NME3-211ENST00000568561 MTF2Q9Y483 593 aaPredicted RBP17.06■□□□□ 0.32
NME3-211ENST00000568561 DNAH14Q0VDD8 3507 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 SMIM28A0A1B0GU29 152 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 PP2D1A8MPX8 630 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 E9PMD0 336 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 CD72P21854 359 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 RBM25P49756 843 aaKnown RBP17.05■□□□□ 0.32
NME3-211ENST00000568561 FXR2P51116 673 aaKnown RBP eCLIP17.05■□□□□ 0.32
NME3-211ENST00000568561 PEX3P56589 373 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 STARD6P59095 220 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 ORC2Q13416 577 aaPredicted RBP17.05■□□□□ 0.32
NME3-211ENST00000568561 UBXN2BQ14CS0 331 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 MLF2Q15773 248 aaPredicted RBP17.05■□□□□ 0.32
NME3-211ENST00000568561 ZNF568Q3ZCX4 644 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 C1orf210Q8IVY1 113 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 C4orf32Q8N8J7 132 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 SNX29Q8TEQ0 813 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 KIFAP3Q92845 792 aa17.05■□□□□ 0.32
NME3-211ENST00000568561 PHLPP2Q6ZVD8 1323 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 K7ERI5 159 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 HIP1RO75146 1068 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 HARSP12081 509 aaKnown RBP17.04■□□□□ 0.32
NME3-211ENST00000568561 NPTX2P47972 431 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 ARPP19P56211 112 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 ROR1Q01973 937 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 POTEHQ6S545 545 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 TAS1R3Q7RTX0 852 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 KIAA2013Q8IYS2 634 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 MAML2Q8IZL2 1156 aaPredicted RBP17.04■□□□□ 0.32
NME3-211ENST00000568561 DAW1Q8N136 415 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 FBXO18Q8NFZ0 1043 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 MCRS1Q96EZ8 462 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 UROC1Q96N76 676 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 ZMAT2Q96NC0 199 aaKnown RBP17.04■□□□□ 0.32
NME3-211ENST00000568561 HINFPQ9BQA5 517 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 LIMCH1Q9UPQ0 1083 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 TNFSF13BQ9Y275 285 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 MRPS23Q9Y3D9 190 aaKnown RBP17.04■□□□□ 0.32
NME3-211ENST00000568561 BACE2Q9Y5Z0 518 aa17.04■□□□□ 0.32
NME3-211ENST00000568561 NCOR2Q9Y618 2525 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 KANSL1LA0AUZ9 987 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 PODXLO00592 558 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 CENPBP07199 599 aaPredicted RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 RHOP08100 348 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 POU2F2P09086 479 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 CEBPBP17676 345 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 MUTP22033 750 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 CDC25AP30304 524 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 GRM5P41594 1212 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 YARSP54577 528 aaKnown RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 UVSSAQ2YD98 709 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 SLC44A4Q53GD3 710 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 VARS2Q5ST30 1063 aaKnown RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 ANKS3Q6ZW76 656 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 TMEM130Q8N3G9 435 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 C18orf25Q96B23 403 aaPredicted RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 SHDQ96IW2 340 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 ACO2Q99798 780 aaKnown RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 RUSC1Q9BVN2 902 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 CCDC94Q9BW85 323 aaPredicted RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 TARS2Q9BW92 718 aaKnown RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 PLA2G2FQ9BZM2 168 aa17.03■□□□□ 0.32
NME3-211ENST00000568561 SPATA6Q9NWH7 488 aaPredicted RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 NOL7Q9UMY1 257 aaKnown RBP17.03■□□□□ 0.32
NME3-211ENST00000568561 TICRRQ7Z2Z1 1910 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 WDR27A2RRH5 827 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 MEFVO15553 781 aaPredicted RBP17.02■□□□□ 0.32
NME3-211ENST00000568561 TRAPPC3O43617 180 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 TOB1P50616 345 aaPredicted RBP17.02■□□□□ 0.32
NME3-211ENST00000568561 FOXK2Q01167 660 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 ZC3H14Q6PJT7 736 aaKnown RBP17.02■□□□□ 0.32
NME3-211ENST00000568561 TPRG1Q6ZUI0 275 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 KCNK18Q7Z418 384 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 APBB1IPQ7Z5R6 666 aaPredicted RBP17.02■□□□□ 0.32
NME3-211ENST00000568561 DCLK2Q8N568 766 aa17.02■□□□□ 0.32
NME3-211ENST00000568561 LLPHQ9BRT6 129 aaKnown RBP17.02■□□□□ 0.32
NME3-211ENST00000568561 DDX23Q9BUQ8 820 aaKnown RBP17.02■□□□□ 0.32
NME3-211ENST00000568561 SEMA4AQ9H3S1 761 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms