RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PHKA2P46019 1235 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 GNG11P61952 73 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 IGBP1P78318 339 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 KLHL30Q0D2K2 578 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 MAPK8IP2Q13387 824 aaPredicted RBP9.66□□□□□ -0.86
VPS39-207ENST00000563692 RAPGEF1Q13905 1077 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 HIC1Q14526 733 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 SURF1Q15526 300 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 GRIK4Q16099 956 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 CDCA2Q69YH5 1023 aaPredicted RBP9.66□□□□□ -0.86
VPS39-207ENST00000563692 KRT39Q6A163 491 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 TRIM65Q6PJ69 517 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 ZNF662Q6ZS27 426 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 KIAA1328Q86T90 577 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 APBB2Q92870 758 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 WNT8BQ93098 351 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 CCDC127Q96BQ5 260 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 SAAL1Q96ER3 474 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 FNBP1Q96RU3 617 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 FAM213AQ9BRX8 229 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 MSTO1Q9BUK6 570 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 NFKBIZQ9BYH8 718 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 TSGA10Q9BZW7 698 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 INTS2Q9H0H0 1204 aaKnown RBP9.66□□□□□ -0.86
VPS39-207ENST00000563692 TSPYL2Q9H2G4 693 aaPredicted RBP9.66□□□□□ -0.86
VPS39-207ENST00000563692 TMEM8AQ9HCN3 771 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 MYO1AQ9UBC5 1043 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 A0A0B4J269 797 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 TISP43B9A030 160 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 ACKR2O00590 384 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 TOM1L1O75674 476 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 C22orf31O95567 290 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 PRKCBP05771 671 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 EIF4A3P38919 411 aaKnown RBP9.65□□□□□ -0.86
VPS39-207ENST00000563692 GCLMP48507 274 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 MXI1P50539 228 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 AP3M2P53677 418 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 CYP24A1Q07973 514 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 NCBP1Q09161 790 aaKnown RBP9.65□□□□□ -0.86
VPS39-207ENST00000563692 KIF5AQ12840 1032 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 MKRN4PQ13434 485 aaPredicted RBP9.65□□□□□ -0.86
VPS39-207ENST00000563692 PSMD6Q15008 389 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 TMEM132AQ24JP5 1023 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 CBWD6Q4V339 395 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 TDRD12Q587J7 1177 aaKnown RBP9.65□□□□□ -0.86
VPS39-207ENST00000563692 CBWD3Q5JTY5 395 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 CBWD5Q5RIA9 395 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 C10orf76Q5T2E6 689 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 SLC39A4Q6P5W5 647 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 MTHFD1LQ6UB35 978 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 SYT10Q6XYQ8 523 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 TAS1R3Q7RTX0 852 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 CBWD2Q8IUF1 395 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 LRRC71Q8N4P6 559 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 DBF4BQ8NFT6 615 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 PARD3BQ8TEW8 1205 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 PPM1EQ8WY54 764 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 MAP7D2Q96T17 732 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 RAD9AQ99638 391 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.65□□□□□ -0.86
VPS39-207ENST00000563692 TARS2Q9BW92 718 aaKnown RBP9.65□□□□□ -0.86
VPS39-207ENST00000563692 LZTFL1Q9NQ48 299 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 PRMT7Q9NVM4 692 aaPredicted RBP9.65□□□□□ -0.86
VPS39-207ENST00000563692 APEX2Q9UBZ4 518 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 DNAI1Q9UI46 699 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 DNAJC12Q9UKB3 198 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 AKT3Q9Y243 479 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 USP20Q9Y2K6 914 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 MYO9BQ13459 2157 aa9.65□□□□□ -0.86
VPS39-207ENST00000563692 MYH9P35579 1960 aaKnown RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 MYH11P35749 1972 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 INO80B-WBP1J3KQ70 363 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 GJB5O95377 273 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 LCA5LO95447 670 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 TNNI1P19237 187 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 MAGEA1P43355 309 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 KIF11P52732 1056 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 MFAP3P55082 362 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 PTENP60484 403 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 DLG4P78352 724 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 DEFB103AP81534 67 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 PPP3CAQ08209 521 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 DRP2Q13474 957 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 PRPF4BQ13523 1007 aaKnown RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 TUBB2AQ13885 445 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 MBTPS1Q14703 1052 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 GPNMBQ14956 572 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 KYAT1Q16773 422 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 PLEKHG4Q58EX7 1191 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 CCDC122Q5T0U0 273 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 IQCEQ6IPM2 695 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 DPY19L2P1Q6NXN4 242 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 FAM117BQ6P1L5 589 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 TRAF7Q6Q0C0 670 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 TSHZ1Q6ZSZ6 1077 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 APBB1IPQ7Z5R6 666 aaPredicted RBP9.64□□□□□ -0.87
VPS39-207ENST00000563692 RPAINQ86UA6 219 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 ZNF710Q8N1W2 664 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 MICALL1Q8N3F8 863 aa9.64□□□□□ -0.87
VPS39-207ENST00000563692 ACRBPQ8NEB7 543 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms