RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ID4P47928 161 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 KCNJ6P48051 423 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 GTF2A2P52657 109 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ID3Q02535 119 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CEBPZQ03701 1054 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 SNAPC2Q13487 334 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 SLC9A5Q14940 896 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ZRSR1Q15695 479 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 TMEM266Q2M3C6 531 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ARHGAP29Q52LW3 1261 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 COBLL1Q53SF7 1204 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CCDC183Q5T5S1 534 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 GTF2IRD2BQ6EKJ0 949 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 PPP4R3AQ6IN85 833 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ERAP2Q6P179 960 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 XRRA1Q6P2D8 792 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CATSPERGQ6ZRH7 1159 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 GTF2IRD2Q86UP8 949 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 MAP4K3Q8IVH8 894 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 MRPS27Q92552 414 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 ZKSCAN4Q969J2 545 aaPredicted RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 COA7Q96BR5 231 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ZNF837Q96EG3 531 aaPredicted RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 ZNF333Q96JL9 665 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 AK8Q96MA6 479 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ZFP42Q96MM3 310 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 TIGD1Q96MW7 591 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 GTPBP4Q9BZE4 634 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 NKX2-4Q9H2Z4 354 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 R3HDMLQ9H3Y0 253 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 RPAP3Q9H6T3 665 aaPredicted RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 SLC38A10Q9HBR0 1119 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 GP6Q9HCN6 339 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 NLRC4Q9NPP4 1024 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 PLCB1Q9NQ66 1216 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 JADE2Q9NQC1 790 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CCDC39Q9UFE4 941 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CGGBP1Q9UFW8 167 aaPredicted RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 FBXO40Q9UH90 709 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 GTF2A1LQ9UNN4 478 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 PTPN22Q9Y2R2 807 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 SLC45A1Q9Y2W3 748 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 ZNF451Q9Y4E5 1061 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 TRIM17Q9Y577 477 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 PCDHGC5Q9Y5F6 944 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 SRPRBQ9Y5M8 271 aaKnown RBP5.7□□□□□ -1.5
LDLR-209ENST00000558528 FHOD1Q9Y613 1164 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 CLIC4Q9Y696 253 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 SCINQ9Y6U3 715 aa5.7□□□□□ -1.5
LDLR-209ENST00000558528 A0A0G2JLL6 359 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 hCG_1642624A0A1W2PR95 340 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 KIF28PB7ZC32 967 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 FSCN2O14926 492 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 TBX1O43435 398 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 SLC25A27O95847 323 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 SNRPB2P08579 225 aaKnown RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 SLURP2P0DP57 97 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 ZBTB48P10074 688 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 RBP3P10745 1247 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 CETPP11597 493 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 LPOP22079 712 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 ADH6P28332 368 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 TM4SF4P48230 202 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 PPM1FP49593 454 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 SMCPP49901 116 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 KPNA1P52294 538 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 INHBEP58166 350 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 IRX3P78415 501 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 JAG1P78504 1218 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 ATP2C1P98194 919 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 PTSQ03393 145 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 FOXD4Q12950 439 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 AUHQ13825 339 aaKnown RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 PRKG1Q13976 671 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 VGLL4Q14135 290 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 SUZ12Q15022 739 aaKnown RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 SLC35F1Q5T1Q4 408 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 L1TD1Q5T7N2 865 aaKnown RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 PRAMEF18Q5VWM3 479 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 PSAPL1Q6NUJ1 521 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 FAM173BQ6P4H8 233 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 EPM2AIP1Q7L775 607 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 TRIM46Q7Z4K8 759 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 PRRT2Q7Z6L0 340 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 MTDHQ86UE4 582 aaKnown RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 CLEC10AQ8IUN9 316 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 CDAN1Q8IWY9 1227 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 FAM43AQ8N2R8 423 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 IL22RA1Q8N6P7 574 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 ANKRD42Q8N9B4 389 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 RNF214Q8ND24 703 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 CHST13Q8NET6 341 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 SYTL5Q8TDW5 730 aaPredicted RBP5.69□□□□□ -1.5
LDLR-209ENST00000558528 TIFAQ96CG3 184 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 HSPBAP1Q96EW2 488 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 FAM20AQ96MK3 541 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 SDF4Q9BRK5 362 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 LRRC27Q9C0I9 530 aa5.69□□□□□ -1.5
LDLR-209ENST00000558528 PTPRHQ9HD43 1115 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms