RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 TKTP29401 623 aaKnown RBP20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 CCT6AP40227 531 aaKnown RBP20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 ID4P47928 161 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 FXR2P51116 673 aaKnown RBP eCLIP20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 SNW1Q13573 536 aaKnown RBP20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 UPP1Q16831 310 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 UVSSAQ2YD98 709 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 PABPC1LQ4VXU2 614 aaKnown RBP20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 C1orf210Q8IVY1 113 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 CCDC83Q8IWF9 413 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 NPAS3Q8IXF0 933 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 C3orf58Q8NDZ4 430 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 SHDQ96IW2 340 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 UROC1Q96N76 676 aa20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 DAXXQ9UER7 740 aaPredicted RBP20.12■□□□□ 0.81
VIPAS39-209ENST00000556909 PHLPP2Q6ZVD8 1323 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 I3L4J1 428 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 LRRN2O75325 713 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 SP9P0CG40 484 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 MLF2Q15773 248 aaPredicted RBP20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 ZC3H14Q6PJT7 736 aaKnown RBP20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 APBB1IPQ7Z5R6 666 aaPredicted RBP20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 CEP120Q8N960 986 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 KXD1Q9BQD3 176 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 DDX23Q9BUQ8 820 aaKnown RBP20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 DNMT3BQ9UBC3 853 aaKnown RBP20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 KCNH3Q9ULD8 1083 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 TNFSF13BQ9Y275 285 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 BACE2Q9Y5Z0 518 aa20.11■□□□□ 0.81
VIPAS39-209ENST00000556909 KANSL1LA0AUZ9 987 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 BRCC3P46736 316 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 SOX4Q06945 474 aaPredicted RBP20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 NBR1Q14596 966 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 ANKS3Q6ZW76 656 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 RTL10Q7L3V2 364 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 ERMP1Q7Z2K6 904 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 C4orf32Q8N8J7 132 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 ING5Q8WYH8 240 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 LLPHQ9BRT6 129 aaKnown RBP20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 CDT1Q9H211 546 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 DDX19AQ9NUU7 478 aaKnown RBP20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 LRWD1Q9UFC0 647 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 LIMCH1Q9UPQ0 1083 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 KIAA1024Q9UPX6 916 aa20.1■□□□□ 0.81
VIPAS39-209ENST00000556909 SMIM28A0A1B0GU29 152 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 K7ERI5 159 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 TRAPPC3O43617 180 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 NEFLP07196 543 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 GRM5P41594 1212 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 TRAPPC10P48553 1259 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 PRKCQQ04759 706 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 ZNF568Q3ZCX4 644 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 MAML2Q8IZL2 1156 aaPredicted RBP20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 FBXO18Q8NFZ0 1043 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 ACO2Q99798 780 aaKnown RBP20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 CEP250Q9BV73 2442 aa20.09■□□□□ 0.81
VIPAS39-209ENST00000556909 NPTX2P47972 431 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 PEX3P56589 373 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 PFKPQ01813 784 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 ROR1Q01973 937 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 SLC5A9Q2M3M2 681 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 SLC44A4Q53GD3 710 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 XKR4Q5GH76 650 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 ALKAL1Q6UXT8 129 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 SNX29Q8TEQ0 813 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 CCDC94Q9BW85 323 aaPredicted RBP20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 PTPRHQ9HD43 1115 aa20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 TOPORSQ9NS56 1045 aaPredicted RBP20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 NOL7Q9UMY1 257 aaKnown RBP20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 MRPS23Q9Y3D9 190 aaKnown RBP20.08■□□□□ 0.81
VIPAS39-209ENST00000556909 COL4A2P08572 1712 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 GPR179Q6PRD1 2367 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 CCDC169A6NNP5 214 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 SEC24BO95487 1268 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 RHOP08100 348 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 YARSP54577 528 aaKnown RBP20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 OSTNP61366 133 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 GNL2Q13823 731 aaKnown RBP20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 UBXN2BQ14CS0 331 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 VARS2Q5ST30 1063 aaKnown RBP20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 SLC8B1Q6J4K2 584 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 TAS1R3Q7RTX0 852 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 DAW1Q8N136 415 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 IGSF22Q8N9C0 903 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 ZMAT2Q96NC0 199 aaKnown RBP20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 MRPL4Q9BYD3 311 aaKnown RBP20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 BCO2Q9BYV7 579 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 SLC38A7Q9NVC3 462 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 ARHGAP28Q9P2N2 729 aa20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 MTF2Q9Y483 593 aaPredicted RBP20.07■□□□□ 0.8
VIPAS39-209ENST00000556909 TICRRQ7Z2Z1 1910 aa20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 ARHGEF37A1IGU5 675 aa20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 WDR27A2RRH5 827 aa20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 PODXLO00592 558 aa20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 EIF5BO60841 1220 aaKnown RBP20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 HIP1RO75146 1068 aa20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 HMGN5P82970 282 aaKnown RBP20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 DMP1Q13316 513 aaPredicted RBP20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 PDIA5Q14554 519 aa20.06■□□□□ 0.8
VIPAS39-209ENST00000556909 ZNF461Q8TAF7 563 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms