RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ZMAT2Q96NC0 199 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 TCF25Q9BQ70 676 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 PAAF1Q9BRP4 392 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 GOLGA2P5Q9HBQ8 144 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 LMBRD1Q9NUN5 540 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 MARCH5Q9NX47 278 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 RBAKQ9NYW8 714 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 HSPBP1Q9NZL4 362 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 LZTS1Q9Y250 596 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 F8W810 466 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 BIN1O00499 593 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 XPOTO43592 962 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 CALUO43852 315 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 EXOC3O60645 756 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 B3GAT3O94766 335 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 POU3F3P20264 500 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 CLCNKBP51801 687 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 ERVFC1P60507 584 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 SOX4Q06945 474 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 NAB2Q15742 525 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 ZNF658Q5TYW1 1059 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 JADE1Q6IE81 842 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 CRELD2Q6UXH1 353 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 DDX53Q86TM3 631 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 XXYLT1Q8NBI6 393 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 RDH13Q8NBN7 331 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 PPP2R3CQ969Q6 453 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 DDX27Q96GQ7 796 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 UROC1Q96N76 676 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 NSUN3Q9H649 340 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 ASB7Q9H672 318 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 CGNQ9P2M7 1197 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 TUBGCP4Q9UGJ1 667 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 MAN1B1Q9UKM7 699 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 UBQLN1Q9UMX0 589 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 PCDHGC5Q9Y5F6 944 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 LAMA3Q16787 3333 aa12.44□□□□□ -0.42
CCDC88C-212ENST00000556767 ZNF233A6NK53 670 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 PODXLO00592 558 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 KIF4AO95239 1232 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 IL18RAPO95256 599 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 CXCL14O95715 111 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 NFICP08651 508 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 CAMK1Q14012 370 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 TMEM132DQ14C87 1099 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 TCEAL5Q5H9L2 206 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 KIAA1841Q6NSI8 718 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 FUT10Q6P4F1 479 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 DCLRE1AQ6PJP8 1040 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 EP400NLQ6ZTU2 488 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 RBM23Q86U06 439 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 CBWD2Q8IUF1 395 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 BRSK2Q8IWQ3 736 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 GUF1Q8N442 669 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 BEST2Q8NFU1 509 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 IGFLR1Q9H665 355 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 KIAA1586Q9HCI6 787 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 ADAM28Q9UKQ2 775 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 NUB1Q9Y5A7 615 aa12.43□□□□□ -0.42
CCDC88C-212ENST00000556767 PRRC2BQ5JSZ5 2229 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 PDXKO00764 312 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 C2CD2LO14523 706 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 NR3C1P04150 777 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 URODP06132 367 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 RPL9P32969 192 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 PRCPP42785 496 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 GUCY2FP51841 1108 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 TFAMQ00059 246 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 POU5F1Q01860 360 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 STIM1Q13586 685 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 SMC1AQ14683 1233 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 SNRNP35Q16560 246 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 UPP1Q16831 310 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 CEP135Q66GS9 1140 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 PDE12Q6L8Q7 609 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 CEP57Q86XR8 500 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 SPATA20Q8TB22 786 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 AUTS2Q8WXX7 1259 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 CCDC127Q96BQ5 260 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 TSPAN18Q96SJ8 248 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 VN1R3Q9BXE9 311 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 GTPBP4Q9BZE4 634 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 NUP62CLQ9H1M0 184 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 KCTD10Q9H3F6 313 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 CLSTN2Q9H4D0 955 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 TLE6Q9H808 572 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 PDE11AQ9HCR9 933 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 NGRNQ9NPE2 291 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 STK39Q9UEW8 545 aa12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-212ENST00000556767 SF3B1O75533 1304 aaKnown RBP eCLIP12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 I3L4J1 428 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 FSCN2O14926 492 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 PER2O15055 1255 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 SOD2P04179 222 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 ADRB2P07550 413 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 CTSAP10619 480 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 CYP3A5P20815 502 aa12.41□□□□□ -0.42
CCDC88C-212ENST00000556767 MCM4P33991 863 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms