RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 ACKR2O00590 384 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 TRAPPC3O43617 180 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 NEMFO60524 1076 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 PFKFB2O60825 505 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 DTNBO60941 627 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 RHOP08100 348 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 PTPN2P17706 415 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 RBM25P49756 843 aaKnown RBP13.96□□□□□ -0.17
SHMT2-223ENST00000556689 LMNB2Q03252 620 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 FZD5Q13467 585 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 TSSK4Q6SA08 328 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 ANKS3Q6ZW76 656 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 TNFRSF25Q93038 417 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 ELSPBP1Q96BH3 223 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 MTMR9Q96QG7 549 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 FAM126AQ9BYI3 521 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-223ENST00000556689 AVENQ9NQS1 362 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-223ENST00000556689 CDV3Q9UKY7 258 aaKnown RBP13.96□□□□□ -0.17
SHMT2-223ENST00000556689 SMG5Q9UPR3 1016 aaKnown RBP13.96□□□□□ -0.17
SHMT2-223ENST00000556689 GDAQ9Y2T3 454 aa13.96□□□□□ -0.17
SHMT2-223ENST00000556689 OTOGLQ3ZCN5 2332 aa13.96□□□□□ -0.18
SHMT2-223ENST00000556689 MAN2B1O00754 1011 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 PRKCBP05771 671 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 SPATA31C1P0DKV0 1188 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 LIG1P18858 919 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 ELF1P32519 619 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 CLCNKBP51801 687 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 NRLP54845 237 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 TANGO2Q6ICL3 276 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 CATSPER3Q86XQ3 398 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 DEPTORQ8TB45 409 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 UROC1Q96N76 676 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 NACC1Q96RE7 527 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 TUFT1Q9NNX1 390 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 HEBP1Q9NRV9 189 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 TPCN1Q9ULQ1 816 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 USP18Q9UMW8 372 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 USP20Q9Y2K6 914 aa13.95□□□□□ -0.18
SHMT2-223ENST00000556689 ZNF197O14709 1029 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 CTDNEP1O95476 244 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 LRG1P02750 347 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 TGM1P22735 817 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 IGFBP6P24592 240 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-223ENST00000556689 TKTP29401 623 aaKnown RBP13.94□□□□□ -0.18
SHMT2-223ENST00000556689 NAMPTP43490 491 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 MTAPQ13126 283 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 PPP2R5DQ14738 602 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 UPP1Q16831 310 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 SLC5A9Q2M3M2 681 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 DCAF4L1Q3SXM0 396 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 FANCMQ8IYD8 2048 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 ZNF461Q8TAF7 563 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 DNASE1L2Q92874 299 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 DOCK6Q96HP0 2047 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 PPP1R10Q96QC0 940 aaKnown RBP13.94□□□□□ -0.18
SHMT2-223ENST00000556689 RTKNQ9BST9 563 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 BRD9Q9H8M2 597 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 ZFP14Q9HCL3 533 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 PRMT8Q9NR22 394 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-223ENST00000556689 GMEB2Q9UKD1 530 aa13.94□□□□□ -0.18
SHMT2-223ENST00000556689 ARHGEF37A1IGU5 675 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 BTBD18B2RXH4 712 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 PRRG1O14668 218 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 FDPSP14324 419 aaKnown RBP13.93□□□□□ -0.18
SHMT2-223ENST00000556689 CYP11B2P19099 503 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 EFNA5P52803 228 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 PPP2R5AQ15172 486 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 GLRA4Q5JXX5 417 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 EEF1DP3Q658K8 133 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 POTEHQ6S545 545 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 PADI6Q6TGC4 694 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 CD300LGQ6UXG3 332 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 MAMSTRQ6ZN01 415 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 APBB1IPQ7Z5R6 666 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-223ENST00000556689 CELF5Q8N6W0 485 aaKnown RBP13.93□□□□□ -0.18
SHMT2-223ENST00000556689 BSNDQ8WZ55 320 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 DDX27Q96GQ7 796 aaKnown RBP13.93□□□□□ -0.18
SHMT2-223ENST00000556689 CORO1BQ9BR76 489 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 TRMT61BQ9BVS5 477 aaKnown RBP13.93□□□□□ -0.18
SHMT2-223ENST00000556689 CCDC113Q9H0I3 377 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 RAB23Q9ULC3 237 aa13.93□□□□□ -0.18
SHMT2-223ENST00000556689 NDRG2Q9UN36 371 aaKnown RBP13.93□□□□□ -0.18
SHMT2-223ENST00000556689 DCDC2BA2VCK2 349 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 ARHGEF35A5YM69 484 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 SHISA7A6NL88 538 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 I3L4J1 428 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 WNT7AO00755 349 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 MED24O75448 989 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 KRT37O76014 449 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 MICAL2O94851 1124 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 ABLIM3O94929 683 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 CEBPBP17676 345 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 BRCC3P46736 316 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 ANKRD1Q15327 319 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 FAM78AQ5JUQ0 283 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 ATF7IP2Q5U623 682 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 SLC8B1Q6J4K2 584 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 ZNF687Q8N1G0 1237 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 FAM3CQ92520 227 aa13.92□□□□□ -0.18
SHMT2-223ENST00000556689 IRF7Q92985 503 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms