RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TEX2Q8IWB9 1127 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 FAM71AQ8IYT1 594 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 MAB21L3Q8N8X9 362 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 CCHCR1Q8TD31 782 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 MORC4Q8TE76 937 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 DHX38Q92620 1227 aaKnown RBP5.8□□□□□ -1.48
LIMA1-212ENST00000552491 TEKT1Q969V4 418 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 KLHL29Q96CT2 875 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 RUNDC3BQ96NL0 473 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 LXNQ9BS40 222 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 TAOK3Q9H2K8 898 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 ARHGEF10LQ9HCE6 1279 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 KCNK9Q9NPC2 374 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 ARHGEF3Q9NR81 526 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 ADAM22Q9P0K1 906 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 SEL1LQ9UBV2 794 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 STK38LQ9Y2H1 464 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 SUGT1Q9Y2Z0 365 aa5.8□□□□□ -1.48
LIMA1-212ENST00000552491 LY75O60449 1722 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 NRXN2Q9P2S2 1712 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 A0A1B0GUA9 196 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 DDX39AO00148 427 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 PIK3CDO00329 1044 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 PPEF1O14829 653 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 GAS7O60861 476 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SUN1O94901 812 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 TTC4O95801 387 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 GH2P01242 217 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 BMP3P12645 472 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ECE1P42892 770 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ITGA8P53708 1063 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 RWDD2BP57060 319 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 MAP2K1Q02750 393 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 CALCOCO2Q13137 446 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 RASA3Q14644 834 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 C2CD6Q53TS8 623 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 TRMT10CQ7L0Y3 403 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 BZW1Q7L1Q6 419 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ANKS1BQ7Z6G8 1248 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ECHDC2Q86YB7 292 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 C7orf43Q8WVR3 580 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 DDX1Q92499 740 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 VTI1AQ96AJ9 217 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ZNF653Q96CK0 615 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 GMCL1Q96IK5 515 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SERPINB12Q96P63 405 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 HOMER3Q9NSC5 361 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 NINJ2Q9NZG7 142 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 PKD2L1Q9P0L9 805 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 WHRNQ9P202 907 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ASIC3Q9UHC3 531 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SCN9AQ15858 1988 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 GZMAP12544 262 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 CYP11B1P15538 503 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 TAC1P20366 129 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 MSH2P43246 934 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 WDR4P57081 412 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SLC8A3P57103 927 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 RNASELQ05823 741 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ABCB5Q2M3G0 1257 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SGO2Q562F6 1265 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 TRAF7Q6Q0C0 670 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 PADI6Q6TGC4 694 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 STXBP4Q6ZWJ1 553 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 INTS8Q75QN2 995 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 CBWD2Q8IUF1 395 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SP8Q8IXZ3 490 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 PPM1KQ8N3J5 372 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 GBP7Q8N8V2 638 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 GMCL1P1Q8NEA9 526 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SHC3Q92529 594 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SLCO2A1Q92959 643 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 RSRC1Q96IZ7 334 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 NACC1Q96RE7 527 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 TGS1Q96RS0 853 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ZC3H12CQ9C0D7 883 aaKnown RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 DBNDD1Q9H9R9 158 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 TOPORSQ9NS56 1045 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 SLC5A4Q9NY91 659 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 EURLQ9NYK6 297 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 HSPBP1Q9NZL4 362 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 PI4KBQ9UBF8 816 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 NKX1-2Q9UD57 310 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-212ENST00000552491 MTUS1Q9ULD2 1270 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 NAALADL1Q9UQQ1 740 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ARL2BPQ9Y2Y0 163 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 UBR3Q6ZT12 1888 aa5.79□□□□□ -1.48
LIMA1-212ENST00000552491 ARHGEF35A5YM69 484 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 EIF4E1BA6NMX2 242 aaKnown RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 RRM1P23921 792 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ADSSP30520 456 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ABL2P42684 1182 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 MXI1P50539 228 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SPP2Q13103 211 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 MYBPC2Q14324 1141 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 CEP55Q53EZ4 464 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 RBM26Q5T8P6 1007 aaKnown RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 CCDC174Q6PII3 467 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 FAM47EQ6ZV65 393 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 TMEM179Q6ZVK1 233 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms