RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CRBNQ96SW2 442 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 LBHD1Q9BQE6 289 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 STK31Q9BXU1 1019 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 PUS3Q9BZE2 481 aaKnown RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 NKX2-4Q9H2Z4 354 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 SMOC1Q9H4F8 434 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 PRDM12Q9H4Q4 367 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF703Q9H7S9 590 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 MMRN2Q9H8L6 949 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 AURKAIP1Q9NWT8 199 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-206ENST00000550611 THEGQ9P2T0 379 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 MYOTQ9UBF9 498 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 RBPJLQ9UBG7 517 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 MYO9BQ13459 2157 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 BAHCC1Q9P281 2608 aa4.45□□□□□ -1.7
LIMA1-206ENST00000550611 CFAP47Q6ZTR5 3102 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 MYO15AQ9UKN7 3530 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 RPAP1Q9BWH6 1393 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-206ENST00000550611 TRIOO75962 3097 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 GRXCR1A8MXD5 290 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 NOP56O00567 594 aaKnown RBP4.44□□□□□ -1.7
LIMA1-206ENST00000550611 PLIN1O60240 522 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 MAFKO60675 156 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 FGFR2P21802 821 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF76P36508 570 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 CCDC57Q2TAC2 916 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF568Q3ZCX4 644 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 MIGA2Q7L4E1 593 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 GPR155Q7Z3F1 870 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 TRIM59Q8IWR1 403 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 TRIM48Q8IWZ4 208 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 VGLL2Q8N8G2 317 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 OR6P1Q8NGX9 317 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 TBC1D22AQ8WUA7 517 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 FAM151AQ8WW52 585 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 BADQ92934 168 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 TEKT1Q969V4 418 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 HOOK2Q96ED9 719 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 MRGPRX3Q96LB0 322 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 EPB41L1Q9H4G0 881 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 PRKRIP1Q9H875 184 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-206ENST00000550611 MSL2Q9HCI7 577 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 CNNM1Q9NRU3 951 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 IGSF5Q9NSI5 407 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 CHD7Q9P2D1 2997 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 OAZ3Q9UMX2 235 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 WDR87Q6ZQQ6 2873 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 ZFHX2Q9C0A1 2572 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-206ENST00000550611 IL16Q14005 1332 aa4.44□□□□□ -1.7
LIMA1-206ENST00000550611 DOCK3Q8IZD9 2030 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ATRNL1Q5VV63 1379 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 GRM8O00222 908 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ARNTLO00327 626 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 DGKIO75912 1065 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 FBXO21O94952 628 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 NAT2P11245 290 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 CR2P20023 1033 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 GIPRP48546 466 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF143P52747 638 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 SMAD3P84022 425 aaKnown RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 FANCCQ00597 558 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 DDX10Q13206 875 aaKnown RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 LSAMPQ13449 338 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 CSRP2Q16527 193 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 RABL6Q3YEC7 729 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 LRRC24Q50LG9 513 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ACBD5Q5T8D3 534 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 CDC42EP5Q6NZY7 148 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ZNF627Q7L945 461 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 NT5DC4Q86YG4 428 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ULK2Q8IYT8 1036 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 SUCLG2Q96I99 432 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 PARK7Q99497 189 aaKnown RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 APBA2Q99767 749 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 SENP6Q9GZR1 1112 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 KCND1Q9NSA2 647 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 FBXL7Q9UJT9 491 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 GJD2Q9UKL4 321 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 RALYQ9UKM9 306 aaKnown RBP4.43□□□□□ -1.7
LIMA1-206ENST00000550611 OGDHLQ9ULD0 1010 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 SLC45A1Q9Y2W3 748 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 AFG3L2Q9Y4W6 797 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 ZDBF2Q9HCK1 2354 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 UTYO14607 1347 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 MROH5Q6ZUA9 1318 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 KIF16BQ96L93 1317 aa4.43□□□□□ -1.7
LIMA1-206ENST00000550611 PI4K2BG5E9Z4 385 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 RAMP2O60895 175 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 ALDH1L1O75891 902 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 PDE8BO95263 885 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 ITGB8P26012 769 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 DNAJA1P31689 397 aaKnown RBP4.42□□□□□ -1.7
LIMA1-206ENST00000550611 CACNA1BQ00975 2339 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 CHAF1AQ13111 956 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-206ENST00000550611 DUSP8Q13202 625 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 SKIDA1Q1XH10 827 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 CAVIN4Q5BKX8 364 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 DDX60LQ5H9U9 1706 aaKnown RBP4.42□□□□□ -1.7
LIMA1-206ENST00000550611 KIAA1211LQ6NV74 962 aa4.42□□□□□ -1.7
LIMA1-206ENST00000550611 FASTKD5Q7L8L6 764 aaKnown RBP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms