RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 FRMD8Q9BZ67 464 aaPredicted RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 DHX35Q9H5Z1 703 aaKnown RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 KCNQ2O43526 872 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 WDR93Q6P2C0 686 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 ANKS1AQ92625 1134 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 KIF12Q96FN5 646 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 OLFM3Q96PB7 478 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 TSC22D3Q99576 134 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 AGXT2Q9BYV1 514 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 IGSF9BQ9UPX0 1349 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 CREB3O43889 395 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 AP1B1Q10567 949 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 MORF4L2Q15014 288 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 USP49Q70CQ1 688 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 LINC00116Q8NCU8 138 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 GTSE1Q9NYZ3 720 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 TAF6LQ9Y6J9 622 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 EXTL3O43909 919 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 SLC10A5Q5PT55 438 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 ANO5Q75V66 913 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 RBBP8NLQ8NC74 664 aaPredicted RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 XPO6Q96QU8 1125 aaKnown RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 FUCA2Q9BTY2 467 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 MOV10L1Q9BXT6 1211 aaKnown RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 G3BP2Q9UN86 482 aaKnown RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 PLAGL2Q9UPG8 496 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 PFDN1O60925 122 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 CHN1P15882 459 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.21□□□□□ -0.29
COL4A6-209ENST00000545689 STYK1Q6J9G0 422 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 RAD51CO43502 376 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 FNTAP49354 379 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 INPP1P49441 399 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 EMC2Q15006 297 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 EFTUD2Q15029 972 aaKnown RBP eCLIP13.21□□□□□ -0.29
COL4A6-209ENST00000545689 P3H1Q32P28 736 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 BTBD6Q96KE9 485 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 FGD4Q96M96 766 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 CCT8L2Q96SF2 557 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 PRMT1Q99873 361 aaKnown RBP13.21□□□□□ -0.29
COL4A6-209ENST00000545689 USP15Q9Y4E8 981 aaPredicted RBP13.21□□□□□ -0.29
COL4A6-209ENST00000545689 SLC4A1P02730 911 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 ARHGDIAP52565 204 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 SLC12A1Q13621 1099 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 CARD9Q9H257 536 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 SMARCAD1Q9H4L7 1026 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 POLD4Q9HCU8 107 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 NSMCE4AQ9NXX6 385 aa13.21□□□□□ -0.29
COL4A6-209ENST00000545689 MAGEB2O15479 319 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 NCOA4Q13772 614 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 RBM15Q96T37 977 aaKnown RBP eCLIP13.21□□□□□ -0.3
COL4A6-209ENST00000545689 EPAS1Q99814 870 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 ERP44Q9BS26 406 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 SETD1BQ9UPS6 1966 aaKnown RBP13.21□□□□□ -0.3
COL4A6-209ENST00000545689 VWDEQ8N2E2 1590 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 RNF149Q8NC42 400 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 TRIM51Q9BSJ1 452 aa13.21□□□□□ -0.3
COL4A6-209ENST00000545689 ZNF70Q9UC06 446 aaPredicted RBP13.21□□□□□ -0.3
COL4A6-209ENST00000545689 SPATA31A6Q5VVP1 1343 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 TYK2P29597 1187 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 TSTA3Q13630 321 aaPredicted RBP13.2□□□□□ -0.3
COL4A6-209ENST00000545689 LAMB3Q13751 1172 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 NBPF20Q3BBV1 942 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 DNAL1Q4LDG9 190 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 PIP4K2CQ8TBX8 421 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 ZBTB17Q13105 803 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 MED15Q96RN5 788 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 DCTN4Q9UJW0 460 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 FAM47DPA6NHR8 397 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 TCP11X1B4DZS4 312 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 EEF1B2P24534 225 aaKnown RBP13.2□□□□□ -0.3
COL4A6-209ENST00000545689 GTF2H1P32780 548 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 POLE2P56282 527 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 LRRC14Q15048 493 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 C1orf228Q6PIY5 440 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 SEPT1Q8WYJ6 367 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 THOC1Q96FV9 657 aaKnown RBP13.2□□□□□ -0.3
COL4A6-209ENST00000545689 TRIM10Q9UDY6 481 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 ADORA2BP29275 332 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 NFX1Q12986 1120 aaKnown RBP13.2□□□□□ -0.3
COL4A6-209ENST00000545689 MTMR2Q13614 643 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 GPRASP2Q96D09 838 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 RANBP17Q9H2T7 1088 aaKnown RBP13.2□□□□□ -0.3
COL4A6-209ENST00000545689 DYNC1I2Q13409 638 aaKnown RBP13.2□□□□□ -0.3
COL4A6-209ENST00000545689 FAM161BQ96MY7 647 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 PAK5Q9P286 719 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 NEU2Q9Y3R4 380 aa13.2□□□□□ -0.3
COL4A6-209ENST00000545689 RGL2O15211 777 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 GAS2O43903 313 aaKnown RBP13.19□□□□□ -0.3
COL4A6-209ENST00000545689 SLC9A1P19634 815 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 ACADSBP45954 432 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 GRB10Q13322 594 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 RGS9BPQ6ZS82 235 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 PPHLN1Q8NEY8 458 aaKnown RBP13.19□□□□□ -0.3
COL4A6-209ENST00000545689 RSAD1Q9HA92 442 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 SP110Q9HB58 689 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 CCDC195A0A1B0GUA6 201 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 SPDYE2BA6NHP3 402 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 DIAPH2O60879 1101 aa13.19□□□□□ -0.3
COL4A6-209ENST00000545689 SPDYE6P0CI01 402 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms