RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 HCFC1R1Q9NWW0 138 aa16.99■□□□□ 0.31
RTN3-211ENST00000542238 DNMT3BQ9UBC3 853 aaKnown RBP16.99■□□□□ 0.31
RTN3-211ENST00000542238 FBXO4Q9UKT5 387 aa16.99■□□□□ 0.31
RTN3-211ENST00000542238 USP20Q9Y2K6 914 aa16.99■□□□□ 0.31
RTN3-211ENST00000542238 MRPS23Q9Y3D9 190 aaKnown RBP16.99■□□□□ 0.31
RTN3-211ENST00000542238 CDY1Q9Y6F8 540 aa16.99■□□□□ 0.31
RTN3-211ENST00000542238 CEP250Q9BV73 2442 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 FRYLO94915 3013 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 DMXL1Q9Y485 3027 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 RPA1P27694 616 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 PUM1Q14671 1186 aaKnown RBP eCLIP16.98■□□□□ 0.31
RTN3-211ENST00000542238 EEF1DP3Q658K8 133 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 ANKS3Q6ZW76 656 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 NPAS3Q8IXF0 933 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 NELL2Q99435 816 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 BACE2Q9Y5Z0 518 aa16.98■□□□□ 0.31
RTN3-211ENST00000542238 NCAM2O15394 837 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 LARGE1O95461 756 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 CLCNKBP51801 687 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 GLRA4Q5JXX5 417 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 ZBTB41Q5SVQ8 909 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 ATF7IP2Q5U623 682 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 HAUS3Q68CZ6 603 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 MAML2Q8IZL2 1156 aaPredicted RBP16.97■□□□□ 0.31
RTN3-211ENST00000542238 ATRIPQ8WXE1 791 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 ING5Q8WYH8 240 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 KIFAP3Q92845 792 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 PPP1R10Q96QC0 940 aaKnown RBP16.97■□□□□ 0.31
RTN3-211ENST00000542238 LTB4R2Q9NPC1 389 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 GDE1Q9NZC3 331 aa16.97■□□□□ 0.31
RTN3-211ENST00000542238 MTF2Q9Y483 593 aaPredicted RBP16.97■□□□□ 0.31
RTN3-211ENST00000542238 SPTLC1O15269 473 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 JAK2O60674 1132 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 ECI2O75521 394 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 OR52Z1P0C646 297 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 MUTP22033 750 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 TKTP29401 623 aaKnown RBP16.96■□□□□ 0.31
RTN3-211ENST00000542238 ELF1P32519 619 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 YARSP54577 528 aaKnown RBP16.96■□□□□ 0.31
RTN3-211ENST00000542238 CSTF1Q05048 431 aaKnown RBP16.96■□□□□ 0.31
RTN3-211ENST00000542238 ORC2Q13416 577 aaPredicted RBP16.96■□□□□ 0.31
RTN3-211ENST00000542238 UPP1Q16831 310 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 DCLK2Q8N568 766 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 SUMF1Q8NBK3 374 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 MCRS1Q96EZ8 462 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 TOPORSQ9NS56 1045 aaPredicted RBP16.96■□□□□ 0.31
RTN3-211ENST00000542238 NCDNQ9UBB6 729 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 MRPS17Q9Y2R5 130 aaKnown RBP16.96■□□□□ 0.31
RTN3-211ENST00000542238 PCDHGA2Q9Y5H1 932 aa16.96■□□□□ 0.31
RTN3-211ENST00000542238 COL4A3Q01955 1670 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 K7ERI5 159 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 PRRG1O14668 218 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 LRG1P02750 347 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 EDN1P05305 212 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 RHOP08100 348 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 PTPN2P17706 415 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 CD72P21854 359 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 ZNF174Q15697 407 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 NT5DC1Q5TFE4 455 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 ZNF852Q6ZMS4 543 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 TPRG1Q6ZUI0 275 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 ZNF461Q8TAF7 563 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 DDX27Q96GQ7 796 aaKnown RBP16.95■□□□□ 0.3
RTN3-211ENST00000542238 KIFC3Q9BVG8 833 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 CCDC94Q9BW85 323 aaPredicted RBP16.95■□□□□ 0.3
RTN3-211ENST00000542238 AVENQ9NQS1 362 aaPredicted RBP16.95■□□□□ 0.3
RTN3-211ENST00000542238 SLC38A7Q9NVC3 462 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 TNFSF13BQ9Y275 285 aa16.95■□□□□ 0.3
RTN3-211ENST00000542238 CITO14578 2027 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 SMIM28A0A1B0GU29 152 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 I3L4J1 428 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 CCT6AP40227 531 aaKnown RBP16.94■□□□□ 0.3
RTN3-211ENST00000542238 BRCC3P46736 316 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 NEK4P51957 841 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 GUCY1B3Q02153 619 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 VARS2Q5ST30 1063 aaKnown RBP16.94■□□□□ 0.3
RTN3-211ENST00000542238 GPR161Q8N6U8 529 aaKnown RBP16.94■□□□□ 0.3
RTN3-211ENST00000542238 SECISBP2LQ93073 1101 aaKnown RBP16.94■□□□□ 0.3
RTN3-211ENST00000542238 BHMT2Q9H2M3 363 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 GOLGA2P5Q9HBQ8 144 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 POLD4Q9HCU8 107 aa16.94■□□□□ 0.3
RTN3-211ENST00000542238 MED19A0JLT2 244 aaPredicted RBP16.93■□□□□ 0.3
RTN3-211ENST00000542238 ARHGEF37A1IGU5 675 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 ZNF197O14709 1029 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 IGFBP6P24592 240 aaPredicted RBP16.93■□□□□ 0.3
RTN3-211ENST00000542238 GRM5P41594 1212 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 RPS9P46781 194 aaKnown RBP16.93■□□□□ 0.3
RTN3-211ENST00000542238 ROR1Q01973 937 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 SLC5A9Q2M3M2 681 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 SLC8B1Q6J4K2 584 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 CD300LGQ6UXG3 332 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 CLDN23Q96B33 292 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 ELSPBP1Q96BH3 223 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 ZSCAN32Q9NX65 697 aa16.93■□□□□ 0.3
RTN3-211ENST00000542238 GPR179Q6PRD1 2367 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 CCDC169A6NNP5 214 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 H7C4K7 107 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 ABLIM3O94929 683 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 SDHBP21912 280 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 TARSP26639 723 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms