RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ITFG1Q8TB96 612 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 FGF14Q92915 247 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 ZBTB45Q96K62 511 aaPredicted RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 ZMAT2Q96NC0 199 aaKnown RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 TARS2Q9BW92 718 aaKnown RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 TMEM134Q9H6X4 195 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 TBC1D17Q9HA65 648 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 ARHGAP28Q9P2N2 729 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 MTRRQ9UBK8 725 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 CDH7Q9ULB5 785 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 POLIQ9UNA4 740 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 STK24Q9Y6E0 443 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 NUMBLQ9Y6R0 609 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 PTPRZ1P23471 2315 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 PRR23AA6NEV1 266 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 ABLIM1O14639 778 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 SLC16A4O15374 487 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 MEFVO15553 781 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 PROZP22891 400 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 HOXA9P31269 272 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 GPC5P78333 572 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 ANGPT1Q15389 498 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 ZNF568Q3ZCX4 644 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 PDXDC1Q6P996 788 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 DTHD1Q6ZMT9 781 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 APBB1IPQ7Z5R6 666 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 SLC7A14Q8TBB6 771 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 FGF13Q92913 245 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 DDX27Q96GQ7 796 aaKnown RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 UROC1Q96N76 676 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 PNMA5Q96PV4 448 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 CCDC94Q9BW85 323 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 MRPL4Q9BYD3 311 aaKnown RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 RAB34Q9BZG1 259 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 KMT5AQ9NQR1 393 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 SLC2A4RGQ9NR83 387 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 HCFC1R1Q9NWW0 138 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 DNMT3BQ9UBC3 853 aaKnown RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 DAXXQ9UER7 740 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 BACE2Q9Y5Z0 518 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 CDY1Q9Y6F8 540 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 ZFP37Q9Y6Q3 630 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 ZFHX2Q9C0A1 2572 aaPredicted RBP9.28□□□□□ -0.92
USP28-203ENST00000537490 PHLPP2Q6ZVD8 1323 aa9.28□□□□□ -0.92
USP28-203ENST00000537490 DOCK8Q8NF50 2099 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 LAD1O00515 517 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 TRAPPC3O43617 180 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 XYLBO75191 536 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 DCNP07585 359 aaKnown RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 MCF2P10911 925 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 PRPHP41219 470 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 YARSP54577 528 aaKnown RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 RAD51AP2Q09MP3 1159 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 DMP1Q13316 513 aaPredicted RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 ZRSR1Q15695 479 aaKnown RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 UVSSAQ2YD98 709 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 MCTP1Q6DN14 999 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 PHLDB3Q6NSJ2 640 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 MPZL3Q6UWV2 235 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 ANKS3Q6ZW76 656 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 NKD2Q969F2 451 aaPredicted RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 SNX27Q96L92 541 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 DRC1Q96MC2 740 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 ACAP3Q96P50 834 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 PLIN2Q99541 437 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 NTPCRQ9BSD7 190 aaKnown RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 TCHPQ9BT92 498 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 ARHGEF3Q9NR81 526 aa9.27□□□□□ -0.93
USP28-203ENST00000537490 TOPORSQ9NS56 1045 aaPredicted RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 RBM19Q9Y4C8 960 aaKnown RBP9.27□□□□□ -0.93
USP28-203ENST00000537490 DOCK6Q96HP0 2047 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 WDR27A2RRH5 827 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 PODXLO00592 558 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 TBC1D4O60343 1298 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 LRRN2O75325 713 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 POU2F2P09086 479 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 HARSP12081 509 aaKnown RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 KCNE1P15382 129 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 RFX1P22670 979 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 GUCY2CP25092 1073 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 ATP2C1P98194 919 aaPredicted RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 ROR1Q01973 937 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SLC10A6Q3KNW5 377 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 PABPC1LQ4VXU2 614 aaKnown RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 SEZ6Q53EL9 994 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SPECC1Q5M775 1068 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 VARS2Q5ST30 1063 aaKnown RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 HYIQ5T013 277 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SLC8B1Q6J4K2 584 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 NPAS3Q8IXF0 933 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 TMEM130Q8N3G9 435 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SYT2Q8N9I0 419 aaPredicted RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 TMEM161BQ8NDZ6 487 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SPIRE2Q8WWL2 714 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 ING5Q8WYH8 240 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 C18orf25Q96B23 403 aaPredicted RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 FOXQ1Q9C009 403 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 C17orf75Q9HAS0 396 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SLC38A7Q9NVC3 462 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms