RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SOD2P04179 222 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 GARTP22102 1010 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 NRIP1P48552 1158 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 POU5F1Q01860 360 aaKnown RBP21.63■■□□□ 1.05
CPSF1-209ENST00000532725 FAM160A1Q05DH4 1040 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 STK4Q13043 487 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 PSMD2Q13200 908 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 UPP1Q16831 310 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 KANK3Q6NY19 840 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 DCLRE1AQ6PJP8 1040 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 CD300LGQ6UXG3 332 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 C18orf25Q96B23 403 aaPredicted RBP21.63■■□□□ 1.05
CPSF1-209ENST00000532725 UROC1Q96N76 676 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 GOLGA2P5Q9HBQ8 144 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 TSHZ2Q9NRE2 1034 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 THEGQ9P2T0 379 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 SPTBN5Q9NRC6 3674 aaKnown RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 A0A0C4DFX4 3053 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 TGFB1I1O43294 461 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 GADD45BO75293 160 aaPredicted RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 RPN1P04843 607 aaKnown RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 LTBRP36941 435 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 CLCNKBP51801 687 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 BMS1Q14692 1282 aaKnown RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 DUSP6Q16828 381 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 BMT2Q1RMZ1 405 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 FUT10Q6P4F1 479 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 CD302Q8IX05 232 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 EFHBQ8N7U6 833 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 TMEM87AQ8NBN3 555 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 ZSWIM2Q8NEG5 633 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 ATXN2LQ8WWM7 1075 aaKnown RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 AUTS2Q8WXX7 1259 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 DDX27Q96GQ7 796 aaKnown RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 TSPAN18Q96SJ8 248 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 CBWD1Q9BRT8 395 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 UBE2ZQ9H832 354 aaPredicted RBP21.62■■□□□ 1.05
CPSF1-209ENST00000532725 CHST7Q9NS84 486 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 UNC80Q8N2C7 3258 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 CITO14578 2027 aa21.62■■□□□ 1.05
CPSF1-209ENST00000532725 LINC01565O15544 149 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 KIF4AO95239 1232 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 TFF2Q03403 129 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 PPP2R3AQ06190 1150 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 SPAG1Q07617 926 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 KCNC3Q14003 757 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 PTPN14Q15678 1187 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 KIAA0319Q5VV43 1072 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 KIAA0895Q8NCT3 520 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 TIGD1Q96MW7 591 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 IPO9Q96P70 1041 aaKnown RBP21.61■■□□□ 1.05
CPSF1-209ENST00000532725 CDCA3Q99618 268 aaPredicted RBP21.61■■□□□ 1.05
CPSF1-209ENST00000532725 HERC2P3Q9BVR0 1158 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 EXOC1Q9NV70 894 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 XIRP2A4UGR9 3374 aa21.61■■□□□ 1.05
CPSF1-209ENST00000532725 UBE4BO95155 1302 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 TMEM189-UBE2V1I3L0A0 370 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 B3GAT3O94766 335 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 RHOBTB3O94955 611 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 LDHAP00338 332 aaKnown RBP21.6■■□□□ 1.05
CPSF1-209ENST00000532725 RPL9P32969 192 aaKnown RBP21.6■■□□□ 1.05
CPSF1-209ENST00000532725 HASPINQ8TF76 798 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 KIF12Q96FN5 646 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 PCIF1Q9H4Z3 704 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 ASB7Q9H672 318 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 CLDND1Q9NY35 253 aa21.6■■□□□ 1.05
CPSF1-209ENST00000532725 CLASP2O75122 1294 aaKnown RBP21.59■■□□□ 1.05
CPSF1-209ENST00000532725 CYP3A5P20815 502 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 SNRPFP62306 86 aaKnown RBP21.59■■□□□ 1.05
CPSF1-209ENST00000532725 MRPS5P82675 430 aaKnown RBP21.59■■□□□ 1.05
CPSF1-209ENST00000532725 DSG1Q02413 1049 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 DLX2Q07687 328 aaPredicted RBP21.59■■□□□ 1.05
CPSF1-209ENST00000532725 KNOP1Q1ED39 458 aaKnown RBP21.59■■□□□ 1.05
CPSF1-209ENST00000532725 USP41Q3LFD5 358 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 NELFCDQ8IXH7 590 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 TMEM130Q8N3G9 435 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 C3orf58Q8NDZ4 430 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 VN1R2Q8NFZ6 395 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 FAM212AQ96EL1 285 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 SAAL1Q96ER3 474 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 CCDC34Q96HJ3 373 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 FAM213AQ9BRX8 229 aa21.59■■□□□ 1.05
CPSF1-209ENST00000532725 MRPL17Q9NRX2 175 aaKnown RBP21.59■■□□□ 1.05
CPSF1-209ENST00000532725 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.58■■□□□ 1.05
CPSF1-209ENST00000532725 PODXLO00592 558 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 KIAA0391O15091 583 aaKnown RBP21.58■■□□□ 1.05
CPSF1-209ENST00000532725 EXTL3O43909 919 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 GLP2RO95838 553 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 KCNA5P22460 613 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 RBM10P98175 930 aaKnown RBP21.58■■□□□ 1.05
CPSF1-209ENST00000532725 KCNB1Q14721 858 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 JADE1Q6IE81 842 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 ARMCX5Q6P1M9 558 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 TMEM184AQ6ZMB5 413 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 ELOA2Q8IYF1 753 aaPredicted RBP21.58■■□□□ 1.05
CPSF1-209ENST00000532725 GPR65Q8IYL9 337 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 B3GALT6Q96L58 329 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 ASB2Q96Q27 587 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 AGPAT3Q9NRZ7 376 aa21.58■■□□□ 1.05
CPSF1-209ENST00000532725 CLEC1BQ9P126 229 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms