RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 CPSF3Q9UKF6 684 aaKnown RBP15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 A0A0U1RQG5 324 aaPredicted RBP15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 TULP1O00294 542 aaPredicted RBP15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 CEP104O60308 925 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 IL18RAPO95256 599 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 C22orf31O95567 290 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 KRT5P13647 590 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 HSPA6P17066 643 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 PLA2G4AP47712 749 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 DRP2Q13474 957 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 CUL2Q13617 745 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 CLEC16AQ2KHT3 1053 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 SGSM1Q2NKQ1 1148 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 DUSP28Q4G0W2 176 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 ATF7IP2Q5U623 682 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 TRIM50Q86XT4 487 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 VCPIP1Q96JH7 1222 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 PCDHB18PQ96TA0 734 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 WNT8AQ9H1J5 351 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 PTPRHQ9HD43 1115 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 OSGEPQ9NPF4 335 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 AVENQ9NQS1 362 aaPredicted RBP15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 RBM12Q9NTZ6 932 aaKnown RBP15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 TAS2R14Q9NYV8 317 aa15.85■□□□□ 0.13
ECHDC1-220ENST00000528402 FAM189A1O60320 539 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 B4GALT4O60513 344 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 VNN1O95497 513 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 MMEP08473 750 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 CLTAP09496 248 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 HOXD8P13378 290 aaPredicted RBP15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 INSRRP14616 1297 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 YWHAEP62258 255 aaKnown RBP15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 NCOA4Q13772 614 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 CASP8Q14790 479 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 EMBQ6PCB8 327 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 LRRC71Q8N4P6 559 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 ARHGEF26Q96DR7 871 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 MS4A14Q96JA4 679 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 KATNBL1Q9H079 304 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 RNPEPQ9H4A4 650 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 LCMT1Q9UIC8 334 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 PACSIN2Q9UNF0 486 aaPredicted RBP15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 ALG6Q9Y672 507 aa15.84■□□□□ 0.13
ECHDC1-220ENST00000528402 ZNF236Q9UL36 1845 aa15.83■□□□□ 0.13
ECHDC1-220ENST00000528402 RRN3P2A6NIE6 340 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 INO80B-WBP1J3KQ70 363 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 ABLIM1O14639 778 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 ZEB2O60315 1214 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 SASH3O75995 380 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 CELF2O95319 508 aaKnown RBP15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 SNAI1O95863 264 aaPredicted RBP15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 EPHB4P54760 987 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 NNTQ13423 1086 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 SMC1AQ14683 1233 aaKnown RBP15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 TAF3Q5VWG9 929 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 MAATS1Q7Z4T9 603 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 PALB2Q86YC2 1186 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 LINC01465Q8N7H1 131 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 CCDC26Q8TAB7 109 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 MAML3Q96JK9 1138 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 TINF2Q9BSI4 451 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 PI4K2AQ9BTU6 479 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 INO80BQ9C086 356 aaPredicted RBP15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 SLITRK6Q9H5Y7 841 aa15.83■□□□□ 0.12
ECHDC1-220ENST00000528402 EVPLQ92817 2033 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 DDX3YO15523 660 aaKnown RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ASS1P00966 412 aaKnown RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 TNNC2P02585 160 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 CYP1A1P04798 512 aaPredicted RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 MCF2P10911 925 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 UNGP13051 313 aaPredicted RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ACO1P21399 889 aaKnown RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 NOP14P78316 857 aaKnown RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 MBTD1Q05BQ5 628 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 TRPC3Q13507 836 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ACVR2BQ13705 512 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 DGKDQ16760 1214 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 APBB1IPQ7Z5R6 666 aaPredicted RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ZBTB33Q86T24 672 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 AFG1LQ8WV93 481 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ANKRD36BP1Q96IX9 119 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 NLRP4Q96MN2 994 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ARID3AQ99856 593 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 PLVAPQ9BX97 442 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 FAM124BQ9H5Z6 455 aaPredicted RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 RPF1Q9H9Y2 349 aaKnown RBP15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 MED4Q9NPJ6 270 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 GDF3Q9NR23 364 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 PCDHB4Q9Y5E5 795 aa15.82■□□□□ 0.12
ECHDC1-220ENST00000528402 ZSWIM8A7E2V4 1837 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 KAT6AQ92794 2004 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 GOLGA6L10A0A0M3HER8 536 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 CCDC66A2RUB6 948 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 MANSC4A6NHS7 340 aaPredicted RBP15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 H3BRB1 525 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 EDN1P05305 212 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 CTNNA2P26232 953 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 SLC1A1P43005 524 aa15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 PCBP1Q15365 356 aaKnown RBP eCLIP15.81■□□□□ 0.12
ECHDC1-220ENST00000528402 TMEM132AQ24JP5 1023 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms