RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 GRAMD1BQ3KR37 738 aa13.91□□□□□ -0.18
TCOF1-213ENST00000514442 NUP85Q9BW27 656 aa13.91□□□□□ -0.18
TCOF1-213ENST00000514442 GDF3Q9NR23 364 aa13.91□□□□□ -0.18
TCOF1-213ENST00000514442 SYNGAP1Q96PV0 1343 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 ITGB3BPQ13352 177 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-213ENST00000514442 CYLC2Q14093 348 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-213ENST00000514442 C2CD2Q9Y426 696 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 IQCA1LA6NCM1 817 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TAL1P17542 331 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FGFR4P22455 802 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 CHRNA3P32297 505 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 AMPD2Q01433 879 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TNFAIP2Q03169 654 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 AFAP1L2Q8N4X5 818 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TMEM35BQ8NCS4 154 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 DTX3LQ8TDB6 740 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FAM161BQ96MY7 647 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TRIM51Q9BSJ1 452 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 SMYD2Q9NRG4 433 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TRAF3IP3Q9Y228 551 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 SPECC1L-ADORA2AF8WAN1 911 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FAM153BP0C7A2 387 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 GNA15P30679 374 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 ACOT2P49753 483 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 ESRRGP62508 458 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 SEC23AQ15436 765 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FAM153CQ494X1 144 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 WLSQ5T9L3 541 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 C1orf146Q5VVC0 180 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 ARMCX2Q7L311 632 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 DNAAF3Q8N9W5 541 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TOPORSQ9NS56 1045 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-213ENST00000514442 HSPBP1Q9NZL4 362 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FAM153AQ9UHL3 310 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 SLC4A7Q9Y6M7 1214 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 C19orf81C9J6K1 198 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 BBS9Q3SYG4 887 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 ACCSLQ4AC99 568 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 SLC44A4Q53GD3 710 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FRMD5Q7Z6J6 570 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 ZNF564Q8TBZ8 553 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-213ENST00000514442 LZICQ8WZA0 190 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 TATDN2Q93075 761 aa13.9□□□□□ -0.18
TCOF1-213ENST00000514442 FAM217BQ9NTX9 383 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-213ENST00000514442 KLK7P49862 253 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 ALDH5A1P51649 535 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 PDE1BQ01064 536 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 NAB2Q15742 525 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TRIM42Q8IWZ5 723 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TAAR1Q96RJ0 339 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TTC1Q99614 292 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 DBR1Q9UK59 544 aaKnown RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 WDR91A4D1P6 747 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 M0QYV0 167 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 CDK17Q00537 523 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 ANKRD20A4Q4UJ75 823 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 NT5DC1Q5TFE4 455 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 RNF25Q96BH1 459 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 GORASP1Q9BQQ3 440 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 C2orf40Q9H1Z8 148 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 IFT122Q9HBG6 1241 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TMCC1O94876 653 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TOB1P50616 345 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 KIAA1755Q5JYT7 1200 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 CWF19L1Q69YN2 538 aaKnown RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 MXRA8Q9BRK3 442 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 WDR70Q9NW82 654 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 UBE4BO95155 1302 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TBX3O15119 743 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 CYP26A1O43174 497 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 CIITAP33076 1130 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TPD52P55327 224 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 PRPSAP1Q14558 356 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 TRIML2Q8N7C3 387 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 FBXL13Q8NEE6 735 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 AGBL3Q8NEM8 1001 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 RBM46Q8TBY0 533 aaKnown RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 ZDHHC15Q96MV8 337 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 PCSK1NQ9UHG2 260 aa13.89□□□□□ -0.19
TCOF1-213ENST00000514442 FNDC3AQ9Y2H6 1198 aaKnown RBP13.89□□□□□ -0.19
TCOF1-213ENST00000514442 ASB14A6NK59 587 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 SOX5P35711 763 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 PSMD6Q15008 389 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 NXNQ6DKJ4 435 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CREG2Q8IUH2 290 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CDKL2Q92772 493 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 KCNH7Q9NS40 1196 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 IL1RAPL1Q9NZN1 696 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 POLRMTO00411 1230 aaKnown RBP13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CCDC22O60826 627 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 SLC18A3Q16572 532 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 PTF1AQ7RTS3 328 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CATSPER3Q86XQ3 398 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 PPP4R1Q8TF05 950 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CFAP36Q96G28 342 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 TMEM120BA0PK00 339 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 CFAP69A5D8W1 941 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 PLS3P13797 630 aa13.88□□□□□ -0.19
TCOF1-213ENST00000514442 SARSP49591 514 aaKnown RBP13.88□□□□□ -0.19
TCOF1-213ENST00000514442 NPEPPSP55786 919 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms