RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PQBP1O60828 265 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 PEX14O75381 377 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 STC2O76061 302 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SNRPA1P09661 255 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 MTHFD1P11586 935 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 NEK3P51956 506 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 CLRN1P58418 232 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 DUSP8Q13202 625 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SEMA5AQ13591 1074 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM214AQ32MH5 1076 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 PABPC1LQ4VXU2 614 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 DACT2Q5SW24 774 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 ANKS6Q68DC2 871 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 MFSD5Q6N075 450 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SEM1Q6ZVN7 128 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 FRMD5Q7Z6J6 570 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 FAM83AQ86UY5 434 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 DCBLD1Q8N8Z6 715 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SLC35B2Q8TB61 432 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 LRTOMTQ8WZ04 291 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 NT5C1BQ96P26 610 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 GNRHR2Q96P88 292 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 KCNC2Q96PR1 638 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 OR14A2Q96R54 314 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 MYOCQ99972 504 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 MEGF9Q9H1U4 602 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SARS2Q9NP81 518 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 CNNM1Q9NRU3 951 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 GNL3LQ9NVN8 582 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SIDT1Q9NXL6 827 aaKnown RBP5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 STAP2Q9UGK3 403 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 SLC23A1Q9UHI7 598 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 TPCN1Q9ULQ1 816 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 PCDHGB6Q9Y5F9 930 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 PCDHA1Q9Y5I3 950 aa5.09□□□□□ -1.59
HMGB1P28-201ENST00000507778 A0A1W2PPL8 197 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 TBKBP1A7MCY6 615 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 GRM6O15303 877 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PMM2O15305 246 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PHGDHO43175 533 aaKnown RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PLATP00750 562 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 CD1AP06126 327 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 INHBBP09529 407 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 IFIT2P09913 472 aaKnown RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PEX2P28328 305 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PRDX5P30044 214 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 OS9Q13438 667 aaPredicted RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 BIRC2Q13490 618 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 BRD3Q15059 726 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 BMT2Q1RMZ1 405 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 KHDC1LQ5JSQ8 128 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 SWSAP1Q6NVH7 229 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 DOK3Q7L591 496 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 XYLT1Q86Y38 959 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 FAM90A1Q86YD7 464 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 SAMD3Q8N6K7 520 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 IL17RDQ8NFM7 739 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 BRIX1Q8TDN6 353 aaKnown RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 MPHOSPH9Q99550 1183 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 CPPED1Q9BRF8 314 aaPredicted RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 NUP62CLQ9H1M0 184 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 MRPL46Q9H2W6 279 aaKnown RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 ZCCHC4Q9H5U6 513 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 ZMAT3Q9HA38 289 aaKnown RBP5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PLA2G3Q9NZ20 509 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 PPP4R1LQ9P1A2 415 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 CPA4Q9UI42 421 aa5.08□□□□□ -1.6
HMGB1P28-201ENST00000507778 TCRBV7S2A1N4TA0A589 114 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 OTOL1A6NHN0 477 aaPredicted RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 PRR5-ARHGAP8B1AHC4 643 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 KIAA0391O15091 583 aaKnown RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 MFAP3LO75121 409 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 RAD17O75943 681 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 POMCP01189 267 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 AMHP03971 560 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 SBK3P0C264 359 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 GNAT2P19087 354 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 RAP2BP61225 183 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 POLD3Q15054 466 aaPredicted RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 TBC1D10BQ4KMP7 808 aaPredicted RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 UBXN11Q5T124 520 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 ZFYVE27Q5T4F4 411 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 ZNF529Q6P280 563 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 APOA5Q6Q788 366 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 LCNL1Q6ZST4 164 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 APBB1IPQ7Z5R6 666 aaPredicted RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 PPP1R3BQ86XI6 285 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 COL23A1Q86Y22 540 aaPredicted RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 NLGN4YQ8NFZ3 816 aaPredicted RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 ZFP28Q8NHY6 868 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 TNPO1Q92973 898 aaKnown RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 RPS6KC1Q96S38 1066 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 NAA15Q9BXJ9 866 aaKnown RBP5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 C22orf23Q9BZE7 217 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 XYLT2Q9H1B5 865 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 ATP6V0A4Q9HBG4 840 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 PCDHA6Q9UN73 950 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 CLCA2Q9UQC9 943 aa5.07□□□□□ -1.6
HMGB1P28-201ENST00000507778 PNPLA7Q6ZV29 1317 aa5.06□□□□□ -1.6
HMGB1P28-201ENST00000507778 FRS3O43559 492 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms