RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 IPPQ9Y573 584 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 TARSL2A2RTX5 802 aaKnown RBP13.84□□□□□ -0.19
COL6A3-212ENST00000491769 EEF2KO00418 725 aaKnown RBP13.84□□□□□ -0.19
COL6A3-212ENST00000491769 TDP2O95551 362 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 DARSP14868 501 aaKnown RBP13.84□□□□□ -0.19
COL6A3-212ENST00000491769 NUDCD3Q8IVD9 361 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 GPT2Q8TD30 523 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 MED15Q96RN5 788 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 USP6P35125 1406 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 PSMD14O00487 310 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 GYG2O15488 501 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 CD4P01730 458 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 ACTR2P61160 394 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 ANKS6Q68DC2 871 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 CYB5R4Q7L1T6 521 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 CHSY1Q86X52 802 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 ARHGAP18Q8N392 663 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 COG1Q8WTW3 980 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 TSEN34Q9BSV6 310 aaKnown RBP13.84□□□□□ -0.19
COL6A3-212ENST00000491769 FAM96AQ9H5X1 160 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 NAGPAQ9UK23 515 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 NEO1Q92859 1461 aa13.84□□□□□ -0.19
COL6A3-212ENST00000491769 CFAP99D6REC4 459 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 TKFCQ3LXA3 575 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 ZRANB3Q5FWF4 1079 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 SLC7A14Q8TBB6 771 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 UCMAQ8WVF2 138 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 SEPT1Q8WYJ6 367 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 ZC4H2Q9NQZ6 224 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 ZNF70Q9UC06 446 aaPredicted RBP13.83□□□□□ -0.19
COL6A3-212ENST00000491769 SCOCQ9UIL1 159 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 PLAAQ9Y263 795 aa13.83□□□□□ -0.19
COL6A3-212ENST00000491769 FAM32AQ9Y421 112 aaKnown RBP13.83□□□□□ -0.19
COL6A3-212ENST00000491769 DCTN3O75935 186 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 EIF3EP60228 445 aaKnown RBP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 SLITRK1Q96PX8 696 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 OSBPL10Q9BXB5 764 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 RNASEH1O60930 286 aaKnown RBP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 OCA2Q04671 838 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 PLEKHM3Q6ZWE6 761 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 RHOT1Q8IXI2 618 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ENAHQ8N8S7 591 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 COLEC11Q9BWP8 271 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ARHGEF38Q9NXL2 777 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 LZTS3O60299 673 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 TRIM72Q6ZMU5 477 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 NT5DC4Q86YG4 428 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ELAC2Q9BQ52 826 aaKnown RBP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 SCUBE2Q9NQ36 999 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ROBO2Q9HCK4 1378 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 NPTXRO95502 500 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 RGS2P41220 211 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 EPHA7Q15375 998 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 TEDDM1Q5T9Z0 273 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 PROM2Q8N271 834 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 NFKBIZQ9BYH8 718 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 PSD3Q9NYI0 1048 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 NR1D1P20393 614 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ZBTB17Q13105 803 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 EFCAB12Q6NXP0 572 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 MLXIPLQ9NP71 852 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 H2AFY2Q9P0M6 372 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ZFP69BQ9UJL9 534 aa13.83□□□□□ -0.2
COL6A3-212ENST00000491769 ADGRA2Q96PE1 1338 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 NPHP3-ACAD11A0A0J9YXS1 232 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 NT5C2P49902 561 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 TAP1Q03518 808 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 SGO1Q5FBB7 561 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 C1orf146Q5VVC0 180 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 CYP4F11Q9HBI6 524 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 FAM49BQ9NUQ9 324 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 DCTN4Q9UJW0 460 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 A0A087WUV0 522 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-212ENST00000491769 PLEKHA8Q96JA3 519 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 BIVM-ERCC5R4GMW8 1640 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 UBE2Q2LH0YL09 131 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 MAGEB2O15479 319 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 CYP19A1P11511 503 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-212ENST00000491769 IGFBP4P22692 258 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 DEUP1Q05D60 604 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 LRRC71Q8N4P6 559 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 SLC25A27O95847 323 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 SKIP12755 728 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 XKR3Q5GH77 459 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 ENOSF1Q7L5Y1 443 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 DEFB128Q7Z7B8 93 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 OXER1Q8TDS5 423 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 ZFATQ9P243 1243 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 ATP7BP35670 1465 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 ITIH6Q6UXX5 1313 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 SYNCRIPO60506 623 aaKnown RBP13.82□□□□□ -0.2
COL6A3-212ENST00000491769 GTF2A2P52657 109 aa13.82□□□□□ -0.2
COL6A3-212ENST00000491769 CYP27B1O15528 508 aa13.81□□□□□ -0.2
COL6A3-212ENST00000491769 MBL2P11226 248 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-212ENST00000491769 NLRP11P59045 1033 aaKnown RBP13.81□□□□□ -0.2
COL6A3-212ENST00000491769 SAMD7Q7Z3H4 446 aa13.81□□□□□ -0.2
COL6A3-212ENST00000491769 NUP93Q8N1F7 819 aa13.81□□□□□ -0.2
COL6A3-212ENST00000491769 TMEM60Q9H2L4 133 aa13.81□□□□□ -0.2
COL6A3-212ENST00000491769 BARHL2Q9NY43 387 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms