RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 SLC38A7Q9NVC3 462 aa20.3■□□□□ 0.84
PTCD3-217ENST00000488801 CGNQ9P2M7 1197 aaKnown RBP20.3■□□□□ 0.84
PTCD3-217ENST00000488801 PRG3Q9Y2Y8 225 aaPredicted RBP20.3■□□□□ 0.84
PTCD3-217ENST00000488801 DENND4AQ7Z401 1863 aa20.3■□□□□ 0.84
PTCD3-217ENST00000488801 CASTOR2A6NHX0 329 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 LACTBL1A8MY62 500 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 KIF4AO95239 1232 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 OR1G1P47890 313 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 KRT17Q04695 432 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 HSP90AA2PQ14568 343 aaPredicted RBP20.29■□□□□ 0.84
PTCD3-217ENST00000488801 UPP1Q16831 310 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 COBLL1Q53SF7 1204 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 PDE12Q6L8Q7 609 aaKnown RBP20.29■□□□□ 0.84
PTCD3-217ENST00000488801 ARMCX5Q6P1M9 558 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 NELFCDQ8IXH7 590 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 HERC2P3Q9BVR0 1158 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 GOLGA2P5Q9HBQ8 144 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 STK39Q9UEW8 545 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 PCDHGC5Q9Y5F6 944 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 PCDHA5Q9Y5H7 936 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.29■□□□□ 0.84
PTCD3-217ENST00000488801 IRAK3Q9Y616 596 aa20.29■□□□□ 0.84
PTCD3-217ENST00000488801 EXTL3O43909 919 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 LDHAP00338 332 aaKnown RBP20.28■□□□□ 0.84
PTCD3-217ENST00000488801 CTSAP10619 480 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 CYP3A5P20815 502 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 WNT7BP56706 349 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 GPD1LQ8N335 351 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 GUF1Q8N442 669 aaKnown RBP20.28■□□□□ 0.84
PTCD3-217ENST00000488801 C3orf58Q8NDZ4 430 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 CCDC47Q96A33 483 aaKnown RBP20.28■□□□□ 0.84
PTCD3-217ENST00000488801 C18orf25Q96B23 403 aaPredicted RBP20.28■□□□□ 0.84
PTCD3-217ENST00000488801 SAAL1Q96ER3 474 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 ASB7Q9H672 318 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 HSPBP1Q9NZL4 362 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 TUBGCP4Q9UGJ1 667 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 ADAM28Q9UKQ2 775 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 DERAQ9Y315 318 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 C2CD2Q9Y426 696 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 UNC80Q8N2C7 3258 aa20.28■□□□□ 0.84
PTCD3-217ENST00000488801 SOD2P04179 222 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 LRPAP1P30533 357 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 CLCNKBP51801 687 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 ZCWPW2Q504Y3 356 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 TCEAL5Q5H9L2 206 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 FUT10Q6P4F1 479 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 ADGRD2Q7Z7M1 963 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 EFCAB13Q8IY85 973 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 ERCC4Q92889 916 aaPredicted RBP20.27■□□□□ 0.84
PTCD3-217ENST00000488801 GBP4Q96PP9 640 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 TCF25Q9BQ70 676 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 FAM213AQ9BRX8 229 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 COLEC11Q9BWP8 271 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 NGRNQ9NPE2 291 aaKnown RBP20.27■□□□□ 0.84
PTCD3-217ENST00000488801 RMND1Q9NWS8 449 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 PUF60Q9UHX1 559 aaKnown RBP20.27■□□□□ 0.84
PTCD3-217ENST00000488801 HOOK1Q9UJC3 728 aaKnown RBP20.27■□□□□ 0.84
PTCD3-217ENST00000488801 UBQLN1Q9UMX0 589 aaKnown RBP20.27■□□□□ 0.84
PTCD3-217ENST00000488801 NCOR1O75376 2440 aa20.27■□□□□ 0.84
PTCD3-217ENST00000488801 DOCK6Q96HP0 2047 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 XIRP2A4UGR9 3374 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 PDXKO00764 312 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 LILRB3O75022 631 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 IL18RAPO95256 599 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 NFICP08651 508 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 IGFBP6P24592 240 aaPredicted RBP20.26■□□□□ 0.83
PTCD3-217ENST00000488801 PTPN14Q15678 1187 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 NFIL3Q16649 462 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 ZNF658Q5TYW1 1059 aaPredicted RBP20.26■□□□□ 0.83
PTCD3-217ENST00000488801 JADE1Q6IE81 842 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 HS2ST1Q7LGA3 356 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 NT5DC4Q86YG4 428 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 SLC9A9Q8IVB4 645 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 GPR65Q8IYL9 337 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 VPS52Q8N1B4 723 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 GOLGA5Q8TBA6 731 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 RABGGTAQ92696 567 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 DDX27Q96GQ7 796 aaKnown RBP20.26■□□□□ 0.83
PTCD3-217ENST00000488801 GPR62Q9BZJ7 368 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 PCIF1Q9H4Z3 704 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 CHST7Q9NS84 486 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 DMAC2Q9NW81 257 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 TRAF3IP3Q9Y228 551 aa20.26■□□□□ 0.83
PTCD3-217ENST00000488801 TCF20Q9UGU0 1960 aaKnown RBP20.26■□□□□ 0.83
PTCD3-217ENST00000488801 PTPRDP23468 1912 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 C2orf71A6NGG8 1288 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 SMC2O95347 1197 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 RPL9P32969 192 aaKnown RBP20.25■□□□□ 0.83
PTCD3-217ENST00000488801 SPAG1Q07617 926 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 HYAL1Q12794 435 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 KCNC3Q14003 757 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 CTC1Q2NKJ3 1217 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 SPATA1Q5VX52 437 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 CBWD2Q8IUF1 395 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 TMEM130Q8N3G9 435 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 SMARCE1Q969G3 411 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 KIF12Q96FN5 646 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 ENTPD7Q9NQZ7 604 aa20.25■□□□□ 0.83
PTCD3-217ENST00000488801 SF3B1O75533 1304 aaKnown RBP eCLIP20.25■□□□□ 0.834e-7■■■■■ 86.2
PTCD3-217ENST00000488801 GOLGA8IPA6NC78 632 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms