RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 C18orf25Q96B23 403 aaPredicted RBP16.08■□□□□ 0.16
USP4-212ENST00000486549 TMEM206Q9H813 350 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 RPF1Q9H9Y2 349 aaKnown RBP16.08■□□□□ 0.16
USP4-212ENST00000486549 ADAM28Q9UKQ2 775 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 LACTBL1A8MY62 500 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 C2CD2LO14523 706 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 EIF3DO15371 548 aaKnown RBP eCLIP16.07■□□□□ 0.16
USP4-212ENST00000486549 LINC01565O15544 149 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 KLRC4O43908 158 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 TADA2AO75478 443 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 CTSAP10619 480 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 KCNE1P15382 129 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 ADSSP30520 456 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 CLCNKBP51801 687 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 EHHADHQ08426 723 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 COL19A1Q14993 1142 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 POSTNQ15063 836 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 ENOX2Q16206 610 aaKnown RBP16.07■□□□□ 0.16
USP4-212ENST00000486549 KMT5BQ4FZB7 885 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 FUT10Q6P4F1 479 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 TAS1R1Q7RTX1 841 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 NELFCDQ8IXH7 590 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 SAAL1Q96ER3 474 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 KIF12Q96FN5 646 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 B3GALT6Q96L58 329 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 HERC2P3Q9BVR0 1158 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 PCIF1Q9H4Z3 704 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 SLC38A7Q9NVC3 462 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 CPSF3Q9UKF6 684 aaKnown RBP16.07■□□□□ 0.16
USP4-212ENST00000486549 STYXL1Q9Y6J8 313 aa16.07■□□□□ 0.16
USP4-212ENST00000486549 TTC26A0AVF1 554 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 C2orf71A6NGG8 1288 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 SOD2P04179 222 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 RPN1P04843 607 aaKnown RBP16.06■□□□□ 0.16
USP4-212ENST00000486549 MYL1P05976 194 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 URODP06132 367 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 LLGL2Q6P1M3 1020 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 ARMCX5Q6P1M9 558 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 EPM2AIP1Q7L775 607 aaPredicted RBP16.06■□□□□ 0.16
USP4-212ENST00000486549 FMR1NBQ8N0W7 255 aaPredicted RBP16.06■□□□□ 0.16
USP4-212ENST00000486549 TMEM130Q8N3G9 435 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 MRPL43Q8N983 215 aaKnown RBP16.06■□□□□ 0.16
USP4-212ENST00000486549 TMEM87AQ8NBN3 555 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 ZSWIM2Q8NEG5 633 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 UROC1Q96N76 676 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 CBWD1Q9BRT8 395 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 FAM213AQ9BRX8 229 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 GPR62Q9BZJ7 368 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 PLEKHA5Q9HAU0 1116 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 STK39Q9UEW8 545 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 TUBGCP4Q9UGJ1 667 aa16.06■□□□□ 0.16
USP4-212ENST00000486549 SF3B1O75533 1304 aaKnown RBP eCLIP16.05■□□□□ 0.168e-6■■■■■ 107
USP4-212ENST00000486549 UBE4BO95155 1302 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 GOLGA8IPA6NC78 632 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 GOLGA8JA6NMD2 632 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 H3BQ06 376 aaPredicted RBP16.05■□□□□ 0.16
USP4-212ENST00000486549 PODXLO00592 558 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 GADD45BO75293 160 aaPredicted RBP16.05■□□□□ 0.16
USP4-212ENST00000486549 HOXD13P35453 343 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 GLUD2P49448 558 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 NDUFV1P49821 464 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 RBM10P98175 930 aaKnown RBP16.05■□□□□ 0.16
USP4-212ENST00000486549 FAM160A1Q05DH4 1040 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 DPYDQ12882 1025 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 PTPN14Q15678 1187 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 DUSP6Q16828 381 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 PTCRAQ6ISU1 281 aaPredicted RBP16.05■□□□□ 0.16
USP4-212ENST00000486549 KIAA1841Q6NSI8 718 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 EFHBQ8N7U6 833 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 ZNF507Q8TCN5 953 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 SCFD1Q8WVM8 642 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 CCDC47Q96A33 483 aaKnown RBP16.05■□□□□ 0.16
USP4-212ENST00000486549 CCDC34Q96HJ3 373 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 C1QTNF1Q9BXJ1 281 aa16.05■□□□□ 0.16
USP4-212ENST00000486549 MRPL17Q9NRX2 175 aaKnown RBP16.05■□□□□ 0.16
USP4-212ENST00000486549 XIRP2A4UGR9 3374 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 TBX10O75333 385 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 B3GAT3O94766 335 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 NFICP08651 508 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 GARTP22102 1010 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 IGFBP6P24592 240 aaPredicted RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 DLX2Q07687 328 aaPredicted RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 STK4Q13043 487 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 ADAM15Q13444 863 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 PNOCQ13519 176 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 SNW1Q13573 536 aaKnown RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 CLUL1Q15846 466 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 UPP1Q16831 310 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 JADE1Q6IE81 842 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 KANK3Q6NY19 840 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 DCLRE1AQ6PJP8 1040 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 CEP57Q86XR8 500 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 RNF168Q8IYW5 571 aaPredicted RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 KIAA0895Q8NCT3 520 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 C3orf58Q8NDZ4 430 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 ENGASEQ8NFI3 743 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 CDCA3Q99618 268 aaPredicted RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 TSHZ2Q9NRE2 1034 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 BARX2Q9UMQ3 279 aaPredicted RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 UBQLN1Q9UMX0 589 aaKnown RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms