RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SIRPGQ9P1W8 387 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 PPP1R9AQ9ULJ8 1098 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RBBP6Q7Z6E9 1792 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 CETN3O15182 167 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 CDH5P33151 784 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SERPINB8P50452 374 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 PLEKHO2Q8TD55 490 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 TMC2Q8TDI7 906 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 FNIP1Q8TF40 1166 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 TEKT1Q969V4 418 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 CADM1Q9BY67 442 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RAB34Q9BZG1 259 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 STN1Q9H668 368 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 PLAC1Q9HBJ0 212 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 C6orf50Q9HD87 102 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 GIN1Q9NXP7 522 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 LMCD1Q9NZU5 365 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 DNM3Q9UQ16 869 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RASGRF2O14827 1237 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 CCDC166P0CW27 439 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SLC9A1P19634 815 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SOX5P35711 763 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF543Q08ER8 600 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RBBP5Q15291 538 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 KNOP1Q1ED39 458 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 INF2Q27J81 1249 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 NAIF1Q69YI7 327 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 NRG4Q8WWG1 115 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 STAMQ92783 540 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 CNDP2Q96KP4 475 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 EYA3Q99504 573 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SIKE1Q9BRV8 207 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 CDC42EP4Q9H3Q1 356 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 TXLNGQ9NUQ3 528 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RPS6KL1Q9Y6S9 549 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 A0A1W2PRG0 241 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 TTLL13PA6NNM8 815 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 MYCP01106 439 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SHBGP04278 402 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 GAP43P17677 238 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 ALCAMQ13740 583 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 BARGINQ6ZT62 677 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 ANKRD23Q86SG2 305 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SYNE4Q8N205 404 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 ZCCHC9Q8N567 271 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RBBP8NLQ8NC74 664 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 OR2W6PQ8NHA6 318 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 DOK1Q99704 481 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 TBC1D10AQ9BXI6 508 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 ARMCX3Q9UH62 379 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 MINPP1Q9UNW1 487 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 IRF6O14896 467 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 RIMBP2O15034 1052 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DENRO43583 198 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DLDP09622 509 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 KRT13P13646 458 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ATP2A2P16615 1042 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 PROZP22891 400 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 HOXD10P28358 340 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 COILP38432 576 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ATP1A2P50993 1020 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MRPS9P82933 396 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 BANPQ8N9N5 519 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 BBOF1Q8ND07 529 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ALKBH8Q96BT7 664 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 SELENOSQ9BQE4 189 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 FRMD8P1Q9BZ68 369 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 TBC1D7Q9P0N9 293 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ZNF212Q9UDV6 495 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DPPA5A6NC42 116 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 IGF2BP3O00425 579 aaKnown RBP eCLIP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 SLC37A4O43826 429 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 TUBP50607 506 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DYNC1I2Q13409 638 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 GPATCH4Q5T3I0 446 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 LRCH2Q5VUJ6 765 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 TATDN1Q6P1N9 297 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DCLRE1AQ6PJP8 1040 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 POLNQ7Z5Q5 900 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 NBPF5PQ86XG9 351 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 WNT8AQ9H1J5 351 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DNAJC18Q9H819 358 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DDX25Q9UHL0 483 aaKnown RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 NRAPQ86VF7 1730 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MAGEB6P1A0A0J9YX57 407 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MEIS2O14770 477 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 TBX10O75333 385 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 FOSP01100 380 aaPredicted RBP5.7□□□□□ -1.5
SYNE1-220ENST00000471834 PIGRP01833 764 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 CETPP11597 493 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DR1Q01658 176 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ARMC3Q5W041 872 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 ADGRD1Q6QNK2 874 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 PPP1R21Q6ZMI0 780 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 DPF3Q92784 378 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 SPATA16Q9BXB7 569 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 MTMR4Q9NYA4 1195 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 PTTG2Q9NZH5 202 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 H0YIN7 160 aa5.7□□□□□ -1.5
SYNE1-220ENST00000471834 CHRNB2P17787 502 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms