RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 KCTD10Q9H3F6 313 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 NSUN3Q9H649 340 aaKnown RBP14.9□□□□□ -0.02
LIMD1-203ENST00000465039 LMBRD1Q9NUN5 540 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 MIOSQ9NXC5 875 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 HSPBP1Q9NZL4 362 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 SSX2IPQ9Y2D8 614 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 PCDHA5Q9Y5H7 936 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 TRIP11Q15643 1979 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 PLXNA4Q9HCM2 1894 aa14.9□□□□□ -0.02
LIMD1-203ENST00000465039 SF3B1O75533 1304 aaKnown RBP eCLIP14.9□□□□□ -0.02
LIMD1-203ENST00000465039 TISP43B9A030 160 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 FSCN2O14926 492 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 MAPK13O15264 365 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 MEFVO15553 781 aaPredicted RBP14.89□□□□□ -0.03
LIMD1-203ENST00000465039 MBD3O95983 291 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 C1RP00736 705 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 LRPAP1P30533 357 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 TNFSF9P41273 254 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 CREMQ03060 361 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 CAMK1Q14012 370 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 COL19A1Q14993 1142 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 UPP1Q16831 310 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 EDRF1Q3B7T1 1238 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 DCLRE1AQ6PJP8 1040 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 CRELD2Q6UXH1 353 aaPredicted RBP14.89□□□□□ -0.03
LIMD1-203ENST00000465039 XXYLT1Q8NBI6 393 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 ZMAT2Q96NC0 199 aaKnown RBP14.89□□□□□ -0.03
LIMD1-203ENST00000465039 CDCA3Q99618 268 aaPredicted RBP14.89□□□□□ -0.03
LIMD1-203ENST00000465039 MARCH5Q9NX47 278 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 RBAKQ9NYW8 714 aaPredicted RBP14.89□□□□□ -0.03
LIMD1-203ENST00000465039 ADAM28Q9UKQ2 775 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 ANK1P16157 1881 aa14.89□□□□□ -0.03
LIMD1-203ENST00000465039 ZNF233A6NK53 670 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 TRAPPC3O43617 180 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 CALUO43852 315 aaPredicted RBP14.88□□□□□ -0.03
LIMD1-203ENST00000465039 SOD2P04179 222 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 CTSAP10619 480 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 RPL13P26373 211 aaKnown RBP14.88□□□□□ -0.03
LIMD1-203ENST00000465039 OR1G1P47890 313 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 ACOT2P49753 483 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 STIM1Q13586 685 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 SMC1AQ14683 1233 aaKnown RBP14.88□□□□□ -0.03
LIMD1-203ENST00000465039 SNRNP35Q16560 246 aaKnown RBP14.88□□□□□ -0.03
LIMD1-203ENST00000465039 TPRNQ4KMQ1 711 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 ZBTB41Q5SVQ8 909 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 SPATA1Q5VX52 437 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 PDXDC1Q6P996 788 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 USP37Q86T82 979 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 FAM213AQ9BRX8 229 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 HERC2P3Q9BVR0 1158 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 ZBP1Q9H171 429 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 CLSTN2Q9H4D0 955 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 ALG13Q9NP73 1137 aaKnown RBP14.88□□□□□ -0.03
LIMD1-203ENST00000465039 DMAC2Q9NW81 257 aa14.88□□□□□ -0.03
LIMD1-203ENST00000465039 LACTBL1A8MY62 500 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 RFXAPO00287 272 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 PSMA7O14818 248 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 SLC34A2O95436 690 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 IGFBP4P22692 258 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 PBX3P40426 434 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 LRRC63Q05C16 580 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 TMEM132DQ14C87 1099 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 ZCWPW2Q504Y3 356 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 GLRA4Q5JXX5 417 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 TMEM173Q86WV6 379 aaPredicted RBP14.87□□□□□ -0.03
LIMD1-203ENST00000465039 NELFCDQ8IXH7 590 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 BEST2Q8NFU1 509 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 MAFAQ8NHW3 353 aaPredicted RBP14.87□□□□□ -0.03
LIMD1-203ENST00000465039 CACTINQ8WUQ7 758 aaKnown RBP14.87□□□□□ -0.03
LIMD1-203ENST00000465039 KIF12Q96FN5 646 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.87□□□□□ -0.03
LIMD1-203ENST00000465039 KIAA1468Q9P260 1216 aa14.87□□□□□ -0.03
LIMD1-203ENST00000465039 PRG3Q9Y2Y8 225 aaPredicted RBP14.87□□□□□ -0.03
LIMD1-203ENST00000465039 ATG2AQ2TAZ0 1938 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 BRWD1Q9NSI6 2320 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 ARHGEF37A1IGU5 675 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 CASTOR2A6NHX0 329 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 B3GAT3O94766 335 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 KIF4AO95239 1232 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 NR3C1P04150 777 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 PTMSP20962 102 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 DNAJB1P25685 340 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 AP3M2P53677 418 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 MORC3Q14149 939 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 USP41Q3LFD5 358 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 SEZ6Q53EL9 994 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 CENPPQ6IPU0 288 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 FUT10Q6P4F1 479 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.86□□□□□ -0.03
LIMD1-203ENST00000465039 WDR49Q8IV35 697 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 ADSSL1Q8N142 457 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 VPS52Q8N1B4 723 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 MRPL43Q8N983 215 aaKnown RBP14.86□□□□□ -0.03
LIMD1-203ENST00000465039 BCL7CQ8WUZ0 217 aaPredicted RBP14.86□□□□□ -0.03
LIMD1-203ENST00000465039 SAAL1Q96ER3 474 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 DHTKD1Q96HY7 919 aaPredicted RBP14.86□□□□□ -0.03
LIMD1-203ENST00000465039 TCF25Q9BQ70 676 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 MKNK1Q9BUB5 465 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 IKZF4Q9H2S9 585 aa14.86□□□□□ -0.03
LIMD1-203ENST00000465039 ENTPD7Q9NQZ7 604 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms