RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 MYO9BQ13459 2157 aa21.5■■□□□ 1.03
COL9A3-204ENST00000463487 GOLGA8IPA6NC78 632 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 CASTOR2A6NHX0 329 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 GOLGA8JA6NMD2 632 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 NT5C1B-RDH14C9J2C7 533 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 CLIC2O15247 247 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 CYP3A5P20815 502 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 TMEM132DQ14C87 1099 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 SLC9A9Q8IVB4 645 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 SMYD4Q8IYR2 804 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-204ENST00000463487 BEST2Q8NFU1 509 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 TMEM174Q8WUU8 243 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 MYLIPQ8WY64 445 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 PPP2R3CQ969Q6 453 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 MRPL38Q96DV4 380 aaKnown RBP21.49■■□□□ 1.03
COL9A3-204ENST00000463487 GUCD1Q96NT3 240 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 ALG13Q9NP73 1137 aaKnown RBP21.49■■□□□ 1.03
COL9A3-204ENST00000463487 FRMD4BQ9Y2L6 1034 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 C2CD2Q9Y426 696 aa21.49■■□□□ 1.03
COL9A3-204ENST00000463487 COL4A4P53420 1690 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-204ENST00000463487 RFXAPO00287 272 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 BIN1O00499 593 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 NR3C1P04150 777 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 RPL9P32969 192 aaKnown RBP21.48■■□□□ 1.03
COL9A3-204ENST00000463487 PRCPP42785 496 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 MORC3Q14149 939 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 SNRNP35Q16560 246 aaKnown RBP21.48■■□□□ 1.03
COL9A3-204ENST00000463487 EDRF1Q3B7T1 1238 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 TIGD5Q53EQ6 642 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 CRELD2Q6UXH1 353 aaPredicted RBP21.48■■□□□ 1.03
COL9A3-204ENST00000463487 SPPL3Q8TCT6 385 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 CACTINQ8WUQ7 758 aaKnown RBP21.48■■□□□ 1.03
COL9A3-204ENST00000463487 POF1BQ8WVV4 589 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 ZMAT2Q96NC0 199 aaKnown RBP21.48■■□□□ 1.03
COL9A3-204ENST00000463487 TLR9Q9NR96 1032 aa21.48■■□□□ 1.03
COL9A3-204ENST00000463487 GRM6O15303 877 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 LPXNO60711 386 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 TADA2AO75478 443 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 POU3F3P20264 500 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-204ENST00000463487 ELAVL2Q12926 359 aaKnown RBP21.47■■□□□ 1.03
COL9A3-204ENST00000463487 NAB2Q15742 525 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 NFIL3Q16649 462 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 ISM2Q6H9L7 571 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 JADE1Q6IE81 842 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 USP37Q86T82 979 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 DDX53Q86TM3 631 aaKnown RBP21.47■■□□□ 1.03
COL9A3-204ENST00000463487 GPT2Q8TD30 523 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 SYAP1Q96A49 352 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-204ENST00000463487 DHTKD1Q96HY7 919 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-204ENST00000463487 FBXL18Q96ME1 805 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 FNBP1Q96RU3 617 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 ADAM28Q9UKQ2 775 aa21.47■■□□□ 1.03
COL9A3-204ENST00000463487 SF3B1O75533 1304 aaKnown RBP eCLIP21.47■■□□□ 1.03
COL9A3-204ENST00000463487 TMEM189-UBE2V1I3L0A0 370 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 TRAPPC3O43617 180 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 B4GALT3O60512 393 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 B3GAT3O94766 335 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 NR2F2P24468 414 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 LRRC63Q05C16 580 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 DCLRE1AQ6PJP8 1040 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 CBWD2Q8IUF1 395 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 ADSSL1Q8N142 457 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 MICAL1Q8TDZ2 1067 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 CXCL16Q9H2A7 254 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 NGRNQ9NPE2 291 aaKnown RBP21.46■■□□□ 1.03
COL9A3-204ENST00000463487 ENTPD7Q9NQZ7 604 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 SSX2IPQ9Y2D8 614 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 R3HCC1Q9Y3T6 440 aaKnown RBP21.46■■□□□ 1.03
COL9A3-204ENST00000463487 TRIP11Q15643 1979 aa21.46■■□□□ 1.03
COL9A3-204ENST00000463487 BICDL2A1A5D9 508 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 PODXLO00592 558 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 MEFVO15553 781 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-204ENST00000463487 SPAG1Q07617 926 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 UPP1Q16831 310 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 CEP135Q66GS9 1140 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 TMC7Q7Z402 723 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 RDH13Q8NBN7 331 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 C18orf25Q96B23 403 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-204ENST00000463487 TCF25Q9BQ70 676 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 DACH1Q9UI36 760 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 NUB1Q9Y5A7 615 aa21.45■■□□□ 1.02
COL9A3-204ENST00000463487 PDCD11Q14690 1871 aaKnown RBP21.45■■□□□ 1.02
COL9A3-204ENST00000463487 CETN3O15182 167 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 NFICP08651 508 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 TMEM191BP0C7N4 346 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 PAX3P23760 479 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 CLCNKBP51801 687 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 ADGRE1Q14246 886 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 ZBTB6Q15916 424 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 CCDC183Q5T5S1 534 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 SPATA1Q5VX52 437 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 CENPPQ6IPU0 288 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 VPS52Q8N1B4 723 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 ANKRD36BP1Q96IX9 119 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 GOLGA2P5Q9HBQ8 144 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 DMAC2Q9NW81 257 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 MARCH5Q9NX47 278 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 TUBGCP4Q9UGJ1 667 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 STXBP5LQ9Y2K9 1186 aa21.44■■□□□ 1.02
COL9A3-204ENST00000463487 MTCH2Q9Y6C9 303 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms