RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SQORQ9Y6N5 450 aa11.92□□□□□ -0.5
SCN9A-205ENST00000454569 TTC26A0AVF1 554 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 KIAA0391O15091 583 aaKnown RBP11.91□□□□□ -0.5
SCN9A-205ENST00000454569 AFPP02771 609 aaKnown RBP11.91□□□□□ -0.5
SCN9A-205ENST00000454569 C4BPAP04003 597 aaKnown RBP11.91□□□□□ -0.5
SCN9A-205ENST00000454569 NFICP08651 508 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 CLTAP09496 248 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 ACTN1P12814 892 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 KRT13P13646 458 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 FMO5P49326 533 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 GUCY2FP51841 1108 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 CLDN10P78369 228 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 ARID5BQ14865 1188 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 SYCP1Q15431 976 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 DCAF4L1Q3SXM0 396 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 ALKAL1Q6UXT8 129 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 AGMOQ6ZNB7 445 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 C15orf39Q6ZRI6 1047 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 SV2AQ7L0J3 742 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 TMC6Q7Z403 805 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 LMO3Q8TAP4 145 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 ADPGKQ9BRR6 497 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 KIAA1586Q9HCI6 787 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 CHST12Q9NRB3 414 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 FAM105AQ9NUU6 356 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 MIOSQ9NXC5 875 aa11.91□□□□□ -0.5
SCN9A-205ENST00000454569 AJAP1Q9UKB5 411 aaPredicted RBP11.91□□□□□ -0.5
SCN9A-205ENST00000454569 KIAA0355O15063 1070 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 RECQL4O94761 1208 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 NOL4O94818 638 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 VNN1O95497 513 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 CST3P01034 146 aaPredicted RBP11.9□□□□□ -0.5
SCN9A-205ENST00000454569 CXCL10P02778 98 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 IGFBP6P24592 240 aaPredicted RBP11.9□□□□□ -0.5
SCN9A-205ENST00000454569 NCBP1Q09161 790 aaKnown RBP11.9□□□□□ -0.5
SCN9A-205ENST00000454569 GLRA4Q5JXX5 417 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 TDRD10Q5VZ19 366 aaKnown RBP11.9□□□□□ -0.5
SCN9A-205ENST00000454569 JADE1Q6IE81 842 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 USP38Q8NB14 1042 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 GSTCDQ8NEC7 633 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 ANKRD20A12PQ8NF67 263 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 ZFP42Q96MM3 310 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 ACAP3Q96P50 834 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 RPF1Q9H9Y2 349 aaKnown RBP11.9□□□□□ -0.5
SCN9A-205ENST00000454569 SIX2Q9NPC8 291 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 RGS18Q9NS28 235 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 PLAGL2Q9UPG8 496 aa11.9□□□□□ -0.5
SCN9A-205ENST00000454569 CEP290O15078 2479 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 C9IYK1 514 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 ENPP3O14638 875 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 CBFA2T2O43439 604 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 TIMP1P01033 207 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 CSF2RAP15509 400 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 ZSCAN20P17040 1043 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 TNNI1P19237 187 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 TBX2Q13207 712 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 FILIP1LQ4L180 1135 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 EPC2Q52LR7 807 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 GJB7Q6PEY0 223 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 MRPL10Q7Z7H8 261 aaKnown RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 ZNF598Q86UK7 904 aaKnown RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 CXorf38Q8TB03 319 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 TAS1R2Q8TE23 839 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 C18orf25Q96B23 403 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 SNX27Q96L92 541 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 ERGIC2Q96RQ1 377 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 PPP1R9BQ96SB3 815 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 CGRRF1Q99675 332 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 CCDC94Q9BW85 323 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 TRIM6Q9C030 488 aaPredicted RBP11.89□□□□□ -0.51
SCN9A-205ENST00000454569 MTMR12Q9C0I1 747 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 CACNG4Q9UBN1 327 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 PARP2Q9UGN5 583 aa11.89□□□□□ -0.51
SCN9A-205ENST00000454569 A0A0U1RQF3 1178 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 PTGESO14684 152 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 ACRP10323 421 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 SYN1P17600 705 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 CAPN2P17655 700 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 PON1P27169 355 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 CDC25BP30305 580 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 FAM189BP81408 668 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 C16orf59Q7L2K0 433 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 ECHDC2Q86YB7 292 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 RNF169Q8NCN4 708 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 CCDC51Q96ER9 411 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 PI4K2AQ9BTU6 479 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 TRAIPQ9BWF2 469 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 SMIM28A0A1B0GU29 152 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 CCDC85CA6NKD9 419 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 PPEF2O14830 753 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 ZNF623O75123 536 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 GYPCP04921 128 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 GATMP50440 423 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 FXR1P51114 621 aaKnown RBP eCLIP11.88□□□□□ -0.51
SCN9A-205ENST00000454569 TFAMQ00059 246 aaKnown RBP11.88□□□□□ -0.51
SCN9A-205ENST00000454569 MYL7Q01449 175 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 SOX4Q06945 474 aaPredicted RBP11.88□□□□□ -0.51
SCN9A-205ENST00000454569 LRMPQ12912 555 aa11.88□□□□□ -0.51
SCN9A-205ENST00000454569 ZBTB6Q15916 424 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms