RNA–Protein interactions for RNA: ENST00000428445.1

VARS-216, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 863 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-216ENST00000428445 MCRS1Q96EZ8 462 aa18.21■□□□□ 0.51
VARS-216ENST00000428445 C8orf76Q96K31 380 aa18.21■□□□□ 0.51
VARS-216ENST00000428445 MTRRQ9UBK8 725 aa18.21■□□□□ 0.51
VARS-216ENST00000428445 KIAA1024Q9UPX6 916 aa18.21■□□□□ 0.51
VARS-216ENST00000428445 ZNF292O60281 2723 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 UPP1Q16831 310 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 SLC5A9Q2M3M2 681 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 NPAS3Q8IXF0 933 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 ERMNQ8TAM6 284 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 DDX27Q96GQ7 796 aaKnown RBP18.2■□□□□ 0.5
VARS-216ENST00000428445 IFT74Q96LB3 600 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 ZFP37Q9Y6Q3 630 aaPredicted RBP18.2■□□□□ 0.5
VARS-216ENST00000428445 FANCMQ8IYD8 2048 aa18.2■□□□□ 0.5
VARS-216ENST00000428445 SMIM28A0A1B0GU29 152 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 CCDC169A6NNP5 214 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 PP2D1A8MPX8 630 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 E9PMD0 336 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 K7ERI5 159 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 NRG2O14511 850 aaPredicted RBP18.19■□□□□ 0.5
VARS-216ENST00000428445 XYLBO75191 536 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 HOXA9P31269 272 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 ARPP19P56211 112 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 PEX3P56589 373 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 ELAVL2Q12926 359 aaKnown RBP18.19■□□□□ 0.5
VARS-216ENST00000428445 UBXN2BQ14CS0 331 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 MLF2Q15773 248 aaPredicted RBP18.19■□□□□ 0.5
VARS-216ENST00000428445 DCAF4L1Q3SXM0 396 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 PABPC1LQ4VXU2 614 aaKnown RBP18.19■□□□□ 0.5
VARS-216ENST00000428445 RMDN1Q96DB5 314 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 ZMAT2Q96NC0 199 aaKnown RBP18.19■□□□□ 0.5
VARS-216ENST00000428445 DDX19AQ9NUU7 478 aaKnown RBP18.19■□□□□ 0.5
VARS-216ENST00000428445 DNAH14Q0VDD8 3507 aa18.19■□□□□ 0.5
VARS-216ENST00000428445 KANSL1LA0AUZ9 987 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 FAM170BA6NMN3 283 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 MEFVO15553 781 aaPredicted RBP18.18■□□□□ 0.5
VARS-216ENST00000428445 CDC25AP30304 524 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 PPP2R5AQ15172 486 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 UVSSAQ2YD98 709 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 MTSS1LQ765P7 747 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 TAS1R3Q7RTX0 852 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 ZBTB45Q96K62 511 aaPredicted RBP18.18■□□□□ 0.5
VARS-216ENST00000428445 ACO2Q99798 780 aaKnown RBP18.18■□□□□ 0.5
VARS-216ENST00000428445 HINFPQ9BQA5 517 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 TARS2Q9BW92 718 aaKnown RBP18.18■□□□□ 0.5
VARS-216ENST00000428445 CDT1Q9H211 546 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 SPATA6Q9NWH7 488 aaPredicted RBP18.18■□□□□ 0.5
VARS-216ENST00000428445 LRWD1Q9UFC0 647 aa18.18■□□□□ 0.5
VARS-216ENST00000428445 MRPS23Q9Y3D9 190 aaKnown RBP18.18■□□□□ 0.5
VARS-216ENST00000428445 SFI1A8K8P3 1242 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 TMEM189-UBE2V1I3L0A0 370 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 RHOP08100 348 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 CEBPBP17676 345 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 NPTX2P47972 431 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 RBM25P49756 843 aaKnown RBP18.17■□□□□ 0.5
VARS-216ENST00000428445 TOB1P50616 345 aaPredicted RBP18.17■□□□□ 0.5
VARS-216ENST00000428445 EFNA5P52803 228 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 IL17AQ16552 155 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 SEZ6Q53EL9 994 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 TANGO2Q6ICL3 276 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 PDXDC1Q6P996 788 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 ALKAL1Q6UXT8 129 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 DAW1Q8N136 415 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 C18orf25Q96B23 403 aaPredicted RBP18.17■□□□□ 0.5
VARS-216ENST00000428445 TCEAL4Q96EI5 215 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 SHDQ96IW2 340 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 DDX23Q9BUQ8 820 aaKnown RBP18.17■□□□□ 0.5
VARS-216ENST00000428445 FOXP1Q9H334 677 aaPredicted RBP18.17■□□□□ 0.5
VARS-216ENST00000428445 PTPRHQ9HD43 1115 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 TNFSF13BQ9Y275 285 aa18.17■□□□□ 0.5
VARS-216ENST00000428445 WDR27A2RRH5 827 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 HIP1RO75146 1068 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 SEC24AO95486 1093 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 HARSP12081 509 aaKnown RBP18.16■□□□□ 0.5
VARS-216ENST00000428445 FXR2P51116 673 aaKnown RBP eCLIP18.16■□□□□ 0.52e-11■■■■■ 30.3
VARS-216ENST00000428445 FOXK2Q01167 660 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 ROR1Q01973 937 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 VARS2Q5ST30 1063 aaKnown RBP18.16■□□□□ 0.5
VARS-216ENST00000428445 TSSK4Q6SA08 328 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 KCNK18Q7Z418 384 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 FBXO18Q8NFZ0 1043 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 SNX29Q8TEQ0 813 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 KIFAP3Q92845 792 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 RUSC1Q9BVN2 902 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 PPP4R2Q9NY27 417 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 LIMCH1Q9UPQ0 1083 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 PCDHB6Q9Y5E3 794 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 BACE2Q9Y5Z0 518 aa18.16■□□□□ 0.5
VARS-216ENST00000428445 PATJQ8NI35 1801 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 PODXLO00592 558 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 GRM5P41594 1212 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 CSTF1Q05048 431 aaKnown RBP18.15■□□□□ 0.5
VARS-216ENST00000428445 PTGDRQ13258 359 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 GNL2Q13823 731 aaKnown RBP18.15■□□□□ 0.5
VARS-216ENST00000428445 ZNF568Q3ZCX4 644 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 XKR4Q5GH76 650 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 HAUS3Q68CZ6 603 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 TPRG1Q6ZUI0 275 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 ANKS3Q6ZW76 656 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 CORO1BQ9BR76 489 aa18.15■□□□□ 0.5
VARS-216ENST00000428445 CCDC94Q9BW85 323 aaPredicted RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms