RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CCL14Q16627 93 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 TRIM68Q6AZZ1 485 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SH3BP5LQ7L8J4 393 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 RBM23Q86U06 439 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 TTC30BQ8N4P2 665 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 FIBCD1Q8N539 461 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 PPP1R14CQ8TAE6 165 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 CPB2Q96IY4 423 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 TNIP3Q96KP6 325 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 OSBPL9Q96SU4 736 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 NAP1L3Q99457 506 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 LRRC1Q9BTT6 524 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 ANKEF1Q9NU02 776 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 DDX20Q9UHI6 824 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 TLL2Q9Y6L7 1015 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 RPTORQ8N122 1335 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 NRXN3Q9Y4C0 1643 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 CASTOR2A6NHX0 329 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 ZRANB2O95218 330 aaKnown RBP eCLIP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 HNRNPH1P31943 449 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 PLCB4Q15147 1175 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 KNOP1Q1ED39 458 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SPATS2Q86XZ4 545 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SAMD3Q8N6K7 520 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 DUSP10Q9Y6W6 482 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 CICQ96RK0 1608 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 FOXP2O15409 715 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SEPT4O43236 478 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SLC37A4O43826 429 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 PALMO75781 387 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 ACRP10323 421 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 KCNB1Q14721 858 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 CDKAL1Q5VV42 579 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 PASD1Q8IV76 773 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 KSR1Q8IVT5 923 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 RDM1Q8NG50 284 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 GDAP1Q8TB36 358 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SKA2Q8WVK7 121 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 AP1M1Q9BXS5 423 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SUDS3Q9H7L9 328 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 FAM208AQ9UK61 1670 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 BRD2P25440 801 aaKnown RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 SLC8A1P32418 973 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 LRRC63Q05C16 580 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 KAZNQ674X7 775 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CES5AQ6NT32 575 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 HIBCHQ6NVY1 386 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 DNAJC24Q6P3W2 148 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 ERICH1Q86X53 443 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 SPATA4Q8NEY3 305 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 FBF1Q8TES7 1133 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 PARD3BQ8TEW8 1205 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 C7orf43Q8WVR3 580 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CCDC77Q9BR77 488 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CKMP06732 381 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 THP07101 528 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CYP11B2P19099 503 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 KCNA3P22001 575 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 NDUFV1P49821 464 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 KYAT1Q16773 422 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 ZC2HC1CQ53FD0 456 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 GKAP1Q5VSY0 366 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 TATDN1Q6P1N9 297 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 DCP1BQ8IZD4 617 aaKnown RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 SYCE1Q8N0S2 351 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 MKL1Q969V6 931 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 REEP2Q9BRK0 252 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CCSER1Q9C0I3 900 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 RNF19AQ9NV58 838 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CD4P01730 458 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 RPA1P27694 616 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 VAMP7P51809 220 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 VSIG10LQ86VR7 867 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 KCND1Q9NSA2 647 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 SERPING1P05155 500 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 PLEKP08567 350 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 IRF1P10914 325 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 AMHR2Q16671 573 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 CATSPER3Q86XQ3 398 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 MAP7D3Q8IWC1 876 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 PDCD6IPQ8WUM4 868 aaKnown RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 ANKZF1Q9H8Y5 726 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 AGO4Q9HCK5 861 aaKnown RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 LSM7Q9UK45 103 aaKnown RBP11.32□□□□□ -0.6
TCOF1-204ENST00000427724 L1RE1Q9UN81 338 aa11.32□□□□□ -0.6
TCOF1-204ENST00000427724 A0A0G2JLL6 359 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 RHOBTB3O94955 611 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 RALAP11233 206 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 EMBQ6PCB8 327 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 PRRT2Q7Z6L0 340 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 CALN1Q9BXU9 219 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 LACRTQ9GZZ8 138 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 CYP4F11Q9HBI6 524 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 CDY2AQ9Y6F7 541 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 TMEM150BA6NC51 233 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 GAS2O43903 313 aaKnown RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 CYBBP04839 570 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 PLS3P13797 630 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 AKAP5P24588 427 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms