RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 NCOA4Q13772 614 aa28.51■■■□□ 2.15
LDB1-202ENST00000425280 IFI16Q16666 785 aaKnown RBP28.51■■■□□ 2.15
LDB1-202ENST00000425280 TAF3Q5VWG9 929 aa28.51■■■□□ 2.15
LDB1-202ENST00000425280 SCARA3Q6AZY7 606 aa28.51■■■□□ 2.15
LDB1-202ENST00000425280 NFRKBQ6P4R8 1299 aa28.51■■■□□ 2.15
LDB1-202ENST00000425280 HYOU1Q9Y4L1 999 aa28.51■■■□□ 2.15
LDB1-202ENST00000425280 NCANO14594 1321 aa28.51■■■□□ 2.15
LDB1-202ENST00000425280 FTCDO95954 541 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 PPP1R13LQ8WUF5 828 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 RABGGTAQ92696 567 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 OSBPL9Q96SU4 736 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 MMS19Q96T76 1030 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 MTMR12Q9C0I1 747 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 PDZD7Q9H5P4 517 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 Q9Y3F1 56 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 NRCAMQ92823 1304 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 KRT5P13647 590 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 CPT1AP50416 773 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 MFSD10Q14728 455 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 CPB2Q96IY4 423 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 SCLT1Q96NL6 688 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 AP5M1Q9H0R1 490 aa28.5■■■□□ 2.15
LDB1-202ENST00000425280 MMEP08473 750 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 PDE6CP51160 858 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 FMO1Q01740 532 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 ZNF410Q86VK4 478 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 TMEM192Q8IY95 271 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 TPCN2Q8NHX9 752 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 COG1Q8WTW3 980 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 ISCUQ9H1K1 167 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 EPC1Q9H2F5 836 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 TSKSQ9UJT2 592 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 ANK1P16157 1881 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 MCF2P10911 925 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 TCP1P17987 556 aaKnown RBP28.49■■■□□ 2.15
LDB1-202ENST00000425280 ARF4P18085 180 aaPredicted RBP28.49■■■□□ 2.15
LDB1-202ENST00000425280 ABCB4P21439 1286 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 NOP14P78316 857 aaKnown RBP28.49■■■□□ 2.15
LDB1-202ENST00000425280 CUL2Q13617 745 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 DUOXA2Q1HG44 320 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 MEI1Q5TIA1 1274 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 PAXIP1Q6ZW49 1069 aaPredicted RBP28.49■■■□□ 2.15
LDB1-202ENST00000425280 LRRC57Q8N9N7 239 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 CTNNBL1Q8WYA6 563 aaPredicted RBP28.49■■■□□ 2.15
LDB1-202ENST00000425280 DDX1Q92499 740 aaKnown RBP28.49■■■□□ 2.15
LDB1-202ENST00000425280 ARHGAP39Q9C0H5 1083 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 NUB1Q9Y5A7 615 aa28.49■■■□□ 2.15
LDB1-202ENST00000425280 FAM170AA1A519 330 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 ANKRD62A6NC57 917 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 CST3P01034 146 aaPredicted RBP28.48■■■□□ 2.15
LDB1-202ENST00000425280 CLTAP09496 248 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 PSEN2P49810 448 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 BEX3Q00994 111 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 CDR2Q01850 454 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 CKAP4Q07065 602 aaKnown RBP28.48■■■□□ 2.15
LDB1-202ENST00000425280 CYP4F22Q6NT55 531 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 CREG2Q8IUH2 290 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 GPR161Q8N6U8 529 aaKnown RBP28.48■■■□□ 2.15
LDB1-202ENST00000425280 UMODL1Q5DID0 1318 aa28.48■■■□□ 2.15
LDB1-202ENST00000425280 HAS3O00219 553 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 PDE2AO00408 941 aaPredicted RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 B4GALT4O60513 344 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 TSPAN1O60635 241 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 MYL3P08590 195 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 ZSCAN20P17040 1043 aaPredicted RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 ACO1P21399 889 aaKnown RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 EFCAB13Q8IY85 973 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 PDCL2Q8N4E4 241 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 RFFLQ8WZ73 363 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 ARHGEF26Q96DR7 871 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 FAM49AQ9H0Q0 323 aaPredicted RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 THAP2Q9H0W7 228 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 ADAMTS10Q9H324 1103 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 RPF1Q9H9Y2 349 aaKnown RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 MBLAC1A4D2B0 266 aaPredicted RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 FTLP02792 175 aaPredicted RBP28.47■■■□□ 2.15
LDB1-202ENST00000425280 CXCL8P10145 99 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 FBXO38Q6PIJ6 1188 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 TRPV1Q8NER1 839 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 PSMB7Q99436 277 aa28.47■■■□□ 2.15
LDB1-202ENST00000425280 RTN2O75298 545 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 GZMAP12544 262 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 PSMC4P43686 418 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 FCGRTP55899 365 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 TUBB4BP68371 445 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 TFAMQ00059 246 aaKnown RBP28.46■■■□□ 2.15
LDB1-202ENST00000425280 HIC1Q14526 733 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 KIZQ2M2Z5 673 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 SLC35G2Q8TBE7 412 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 IL18RAPO95256 599 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 ASS1P00966 412 aaKnown RBP28.46■■■□□ 2.15
LDB1-202ENST00000425280 CALCAP01258 141 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 STAG3L1P0CL83 205 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 H2AFXP16104 143 aaPredicted RBP28.46■■■□□ 2.15
LDB1-202ENST00000425280 CXCR5P32302 372 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 CAGE1Q8TC20 777 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 IMPG2Q9BZV3 1241 aa28.46■■■□□ 2.15
LDB1-202ENST00000425280 TBC1D8O95759 1140 aa28.45■■■□□ 2.14
LDB1-202ENST00000425280 TBXAS1P24557 533 aaPredicted RBP28.45■■■□□ 2.14
LDB1-202ENST00000425280 MYL6P60660 151 aa28.45■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms