RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DGKKQ5KSL6 1271 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ANKS6Q68DC2 871 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 KIAA0408Q6ZU52 694 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CEP170P1Q96L14 293 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 PPP1R2P1Q96PQ5 205 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 C6orf62Q9GZU0 229 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 NDUFA13Q9P0J0 144 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 VHLP40337 213 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF235Q14590 738 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 TSNQ15631 228 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ASPRV1Q53RT3 343 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 C2CD6Q53TS8 623 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 TRIM65Q6PJ69 517 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 METTL22Q9BUU2 404 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF304Q9HCX3 659 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ALDH1B1P30837 517 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 MTHFD1LQ6UB35 978 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 FANCBQ8NB91 859 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CHAMP1Q96JM3 812 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 EPC1Q9H2F5 836 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 AIM2O14862 343 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PSAPP07602 524 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PLBD2Q8NHP8 589 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 IP6K2Q9UHH9 426 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 STAP1Q9ULZ2 295 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PKP3Q9Y446 797 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 CLIC4Q9Y696 253 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 RAB2AP61019 212 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 TCEAL5Q5H9L2 206 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 HERC5Q9UII4 1024 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 TCN1P20061 433 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 TM6SF1Q9BZW5 370 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 VTA1Q9NP79 307 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 USP15Q9Y4E8 981 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 ANKRD65E5RJM6 399 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 CHI3L1P36222 383 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 SDE2Q6IQ49 451 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 CYP4Z2PQ8N1L4 340 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 POLG2Q9UHN1 485 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 MTO1Q9Y2Z2 717 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 ATP10DQ9P241 1426 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 OSTNP61366 133 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 CNTN1Q12860 1018 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 SPANXN2Q5MJ10 180 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 GPT2Q8TD30 523 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 RASSF5Q8WWW0 418 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 MAGEA13PA6NCF6 341 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 ARHGDIBP52566 201 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 FCHO2Q0JRZ9 810 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 ZBTB38Q8NAP3 1195 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 ECSITQ9BQ95 431 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PALD1Q9ULE6 856 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 V9GYQ6 96 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PRG4Q92954 1404 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 TIMM10P62072 90 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 FAM89AQ96GI7 184 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PNMA8CA0A1B0GUJ8 204 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PRIM2P49643 509 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 CDC73Q6P1J9 531 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 CYP4Z1Q86W10 505 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 URGCPQ8TCY9 931 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 PHACTR1Q9C0D0 580 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 TRABDQ9H4I3 376 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 SLC9A2Q9UBY0 812 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 SNX24Q9Y343 169 aa13.98□□□□□ -0.17
CCDC88A-204ENST00000413716 OR6B3Q8NGW1 331 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 PGBD4Q96DM1 585 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 POLR3EQ9NVU0 708 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 MRC2Q9UBG0 1479 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 ZBTB10Q96DT7 871 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 RANBP17Q9H2T7 1088 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 EIF3HO15372 352 aaKnown RBP eCLIP13.97□□□□□ -0.173e-6■■□□□ 13.8
CCDC88A-204ENST00000413716 LCA5LO95447 670 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 GPC5P78333 572 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 ITGB3BPQ13352 177 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 CACTIN-AS1Q8N1I8 211 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 CATSPER2Q96P56 530 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 CAAP1Q9H8G2 361 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 NMRK1Q9NWW6 199 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 SRPRBQ9Y5M8 271 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 DYNC1LI2O43237 492 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 ALDH1A2O94788 518 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 TBXAS1P24557 533 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 EFL1Q7Z2Z2 1120 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 DCAF5Q96JK2 942 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 CD274Q9NZQ7 290 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 DNMBPQ6XZF7 1577 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 SMCO3A2RU48 225 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 ITGA1P56199 1179 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 DHX34Q14147 1143 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 LRRC14Q15048 493 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 EDRF1Q3B7T1 1238 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 COMMD2Q86X83 199 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 SULF1Q8IWU6 871 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 AMNQ9BXJ7 453 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 IL1RL2Q9HB29 575 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 TAP1Q03518 808 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF57Q68EA5 555 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 YTHDC2Q9H6S0 1430 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms