RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CA8P35219 290 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 PHKA2P46019 1235 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 SMTNP53814 917 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 PEX3P56589 373 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 ERVFC1P60507 584 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 ALCAMQ13740 583 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 DSC3Q14574 896 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 CLLU1OSQ5K130 101 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 FAM26FQ5R3K3 315 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 CCDC183Q5T5S1 534 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 PLPP4Q5VZY2 271 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 MAEAQ7L5Y9 396 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 HAUS6Q7Z4H7 955 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 RETREG3Q86VR2 466 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 FAM178BQ8IXR5 827 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 THNSL1Q8IYQ7 743 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 CMTR2Q8IYT2 770 aaKnown RBP10.08□□□□□ -0.8
VPS53-203ENST00000401468 MYCT1Q8N699 235 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 TRIML1Q8N9V2 468 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 COLGALT1Q8NBJ5 622 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 KIAA0895Q8NCT3 520 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 MICAL1Q8TDZ2 1067 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 PRIMPOLQ96LW4 560 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 SAMD11Q96NU1 681 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 TRAIPQ9BWF2 469 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 GCOM2Q9BZD3 368 aaPredicted RBP10.08□□□□□ -0.8
VPS53-203ENST00000401468 INO80BQ9C086 356 aaPredicted RBP10.08□□□□□ -0.8
VPS53-203ENST00000401468 POLD4Q9HCU8 107 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 RGS18Q9NS28 235 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 RMND1Q9NWS8 449 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 LMCD1Q9NZU5 365 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 INPP5FQ9Y2H2 1132 aa10.08□□□□□ -0.8
VPS53-203ENST00000401468 CNTNAP2Q9UHC6 1331 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 ZMYM2Q9UBW7 1377 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 C5orf67F2Z3F1 127 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 ACKR2O00590 384 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 AXIN1O15169 862 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 GPR182O15218 404 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 GLP2RO95838 553 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 EDN1P05305 212 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 SRGAP2CP0DJJ0 459 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 IDEP14735 1019 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 ATF7P17544 494 aaPredicted RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 PROZP22891 400 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 NMT1P30419 496 aaKnown RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 HOXA11P31270 313 aaPredicted RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 HOXD13P35453 343 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 NDUFV1P49821 464 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 CASP5P51878 434 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 STK4Q13043 487 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 MORC3Q14149 939 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 LEXMQ3ZCV2 418 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 TPRNQ4KMQ1 711 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 HERC4Q5GLZ8 1057 aaPredicted RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 ZNF658Q5TYW1 1059 aaPredicted RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 MAP4K3Q8IVH8 894 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 GLIS3Q8NEA6 775 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 VN1R2Q8NFZ6 395 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 SNIP1Q8TAD8 396 aaKnown RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 ZNF507Q8TCN5 953 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 AUTS2Q8WXX7 1259 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 SMARCE1Q969G3 411 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 MRGPRX2Q96LB1 330 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 KIFC3Q9BVG8 833 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 FTHL17Q9BXU8 183 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 FGFBP2Q9BYJ0 223 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 GBP3Q9H0R5 595 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 CWH43Q9H720 699 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 C11orf16Q9NQ32 467 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 KMT5AQ9NQR1 393 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 PRMT7Q9NVM4 692 aaPredicted RBP10.07□□□□□ -0.8
VPS53-203ENST00000401468 MAN1B1Q9UKM7 699 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 TBX20Q9UMR3 447 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 STYXL1Q9Y6J8 313 aa10.07□□□□□ -0.8
VPS53-203ENST00000401468 LRRIQ4A6NIV6 560 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 ABLIM1O14639 778 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 SLC16A4O15374 487 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 B4GALT3O60512 393 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 TSPAN1O60635 241 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 FGF18O76093 207 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 MYBP10242 640 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 SFPQP23246 707 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS53-203ENST00000401468 AXLP30530 894 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 AFF1P51825 1210 aaKnown RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 CAMK4Q16566 473 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 TMEM31Q5JXX7 168 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 L1TD1Q5T7N2 865 aaKnown RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 FOXR2Q6PJQ5 311 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 SLC24A5Q71RS6 500 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 TMEM173Q86WV6 379 aaPredicted RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 ECHDC2Q86YB7 292 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 ZBTB8OSQ8IWT0 167 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 DEPTORQ8TB45 409 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 SCFD1Q8WVM8 642 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 ERCC4Q92889 916 aaPredicted RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 HPS3Q969F9 1004 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 PABPC5Q96DU9 382 aaKnown RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 CASD1Q96PB1 797 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 MRPL44Q9H9J2 332 aaKnown RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 PTPRHQ9HD43 1115 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms