RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 DSTYKQ6XUX3 929 aa10.11□□□□□ -0.79
SMAD9-203ENST00000399275 DDX47Q9H0S4 455 aaKnown RBP10.11□□□□□ -0.79
SMAD9-203ENST00000399275 GREM2Q9H772 168 aa10.11□□□□□ -0.79
SMAD9-203ENST00000399275 PLGRKTQ9HBL7 147 aa10.11□□□□□ -0.79
SMAD9-203ENST00000399275 RBM12Q9NTZ6 932 aaKnown RBP10.11□□□□□ -0.79
SMAD9-203ENST00000399275 TRIM10Q9UDY6 481 aa10.11□□□□□ -0.79
SMAD9-203ENST00000399275 FIS1Q9Y3D6 152 aa10.11□□□□□ -0.79
SMAD9-203ENST00000399275 PDS5AQ29RF7 1337 aaKnown RBP10.11□□□□□ -0.79
SMAD9-203ENST00000399275 CENPXA8MT69 81 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 KRT37O76014 449 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 HSPA4LO95757 839 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 GHRP10912 638 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 NFKBIAP25963 317 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 BPIFB4P59827 614 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 LGALS3BPQ08380 585 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 THOC5Q13769 683 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 KRT27Q7Z3Y8 459 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 SYTL5Q8TDW5 730 aaPredicted RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 TBCKQ8TEA7 893 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 OTULINQ96BN8 352 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 VMP1Q96GC9 406 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 DNAJC7Q99615 494 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 DLC1Q96QB1 1528 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 CCDC78A2IDD5 438 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 DAPK3O43293 454 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 PSTPIP1O43586 416 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 MXI1P50539 228 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 TBX2Q13207 712 aaPredicted RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 PRPSAP1Q14558 356 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 OASLQ15646 514 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 ZNF618Q5T7W0 954 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 FAM178BQ8IXR5 827 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 ZNF786Q8N393 782 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 GUF1Q8N442 669 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 NCLNQ969V3 563 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 VPS39Q96JC1 886 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 KCNK16Q96T55 309 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 PRMT1Q99873 361 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 MRPL1Q9BYD6 325 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 PDZK1P1A8MUH7 402 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 SMARCA1P28370 1054 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 SCNN1BP51168 640 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 DMC1Q14565 340 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 HADHQ16836 314 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 ATP13A5Q4VNC0 1218 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 ACAD11Q709F0 780 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 TTC25Q96NG3 672 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 REXO4Q9GZR2 422 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 CCDC182A6NF36 153 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 TBC1D4O60343 1298 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 TOMM70O94826 608 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 EPN2O95208 641 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 MAPK4P31152 587 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 AOC3Q16853 763 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 WLSQ5T9L3 541 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 POTEAQ6S8J7 498 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 GIPC3Q8TF64 312 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 GLMNQ92990 594 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 ZFRQ96KR1 1074 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 DCUN1D5Q9BTE7 237 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 THTPAQ9BU02 230 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 JMJD4Q9H9V9 463 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 MAP3K20Q9NYL2 800 aaKnown RBP10.1□□□□□ -0.79
SMAD9-203ENST00000399275 AURKCQ9UQB9 309 aa10.1□□□□□ -0.79
SMAD9-203ENST00000399275 TRIM64A6NGJ6 449 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 TRIM64BA6NI03 449 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 PLEKHA8P1O95397 391 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 KRT19P08727 400 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 ATF7P17544 494 aaPredicted RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 DDX5P17844 614 aaKnown RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 YWHABP31946 246 aaKnown RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 ERVK-24P63145 666 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 PDCD10Q9BUL8 212 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 WWP1Q9H0M0 922 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 KRT84Q9NSB2 600 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 DNAJC11Q9NVH1 559 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 SELENONQ9NZV5 590 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 PRKAB2O43741 272 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 ENO1P06733 434 aaKnown RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 SLC1A4P43007 532 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 MMP14P50281 582 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 GRSF1Q12849 480 aaKnown RBP eCLIP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 ACAP2Q15057 778 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 SYCP2LQ5T4T6 812 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 RAB44Q7Z6P3 723 aaPredicted RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 YTHDF3Q7Z739 585 aaKnown RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 TPH2Q8IWU9 490 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 RBBP8NLQ8NC74 664 aaPredicted RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 TGFBRAP1Q8WUH2 860 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 TBATAQ96M53 351 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 ZNF285Q96NJ3 590 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 SLC39A3Q9BRY0 314 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 RHOBTB2Q9BYZ6 727 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 UBN1Q9NPG3 1134 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 PPP1R3GB7ZBB8 358 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 MATN2O00339 956 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 COPEO14579 308 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 EFCAB14O75071 495 aa10.09□□□□□ -0.79
SMAD9-203ENST00000399275 PRPF6O94906 941 aaKnown RBP10.09□□□□□ -0.79
SMAD9-203ENST00000399275 KITP10721 976 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms