RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FGFR3P22607 806 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 PBX1P40424 430 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 TAP1Q03518 808 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 STIM1Q13586 685 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SNRNP35Q16560 246 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 ZBTB41Q5SVQ8 909 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 NELFBQ8WX92 580 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 CEP295NLQ96MC4 621 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 MSTO1Q9BUK6 570 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 BCO2Q9BYV7 579 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 XYLT2Q9H1B5 865 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 NRDE2Q9H7Z3 1164 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 INTS13Q9NVM9 706 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SIX4Q9UIU6 781 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 UBQLN1Q9UMX0 589 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 PTPRJQ12913 1337 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 DENND4CQ5VZ89 1909 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 ZNF233A6NK53 670 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 LACTBL1A8MY62 500 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 H3BNC9 293 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 HNRNPDLO14979 420 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 LPXNO60711 386 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 FGFR1OPO95684 399 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 TNFSF9P41273 254 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 BFSP1Q12934 665 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 DCLRE1AQ6PJP8 1040 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 DPH6Q7L8W6 267 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 HS2ST1Q7LGA3 356 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 ZSWIM2Q8NEG5 633 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SLC35C1Q96A29 364 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 VN1R3Q9BXE9 311 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 PBX4Q9BYU1 374 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 UBE2OQ9C0C9 1292 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 CXCL16Q9H2A7 254 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 PRDM5Q9NQX1 630 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SNTG2Q9NY99 539 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 MRPL42Q9Y6G3 142 aaKnown RBP7.62□□□□□ -1.19
LIMA1-202ENST00000394943 DNAH12Q6ZR08 3092 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 FSD2A1L4K1 749 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 TISP43B9A030 160 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 GABRDO14764 452 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 TACC1O75410 805 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 DDHD2O94830 711 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 VNN1O95497 513 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 ACRP10323 421 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 IDEP14735 1019 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SYN1P17600 705 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 SARM1Q6SZW1 724 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 MAEAQ7L5Y9 396 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 IKZF4Q9H2S9 585 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 TMEM8AQ9HCN3 771 aa7.62□□□□□ -1.19
LIMA1-202ENST00000394943 MEIS3P2A8K0S8 358 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 GALTP07902 379 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 BMPR1AP36894 532 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 PNPLA4P41247 253 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 RAD51AP2Q09MP3 1159 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 ARMCX5Q6P1M9 558 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 C11orf57Q6ZUT1 292 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-202ENST00000394943 SUSD3Q96L08 255 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 BACE2Q9Y5Z0 518 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 SYN3O14994 580 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 PPM1AP35813 382 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 SOX4Q06945 474 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-202ENST00000394943 C9orf57Q5W0N0 161 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 PDXDC1Q6P996 788 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 RNPC3Q96LT9 517 aaKnown RBP7.61□□□□□ -1.19
LIMA1-202ENST00000394943 TSG101Q99816 390 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 NAA15Q9BXJ9 866 aaKnown RBP7.61□□□□□ -1.19
LIMA1-202ENST00000394943 ZBP1Q9H171 429 aa7.61□□□□□ -1.19
LIMA1-202ENST00000394943 RPF1Q9H9Y2 349 aaKnown RBP7.61□□□□□ -1.19
LIMA1-202ENST00000394943 XPOTO43592 962 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 ARHGEF15O94989 841 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 KCNJ6P48051 423 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 INCA1Q0VD86 236 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 TWF2Q6IBS0 349 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 DEFB128Q7Z7B8 93 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CBWD2Q8IUF1 395 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CEP120Q8N960 986 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 C1orf127Q8N9H9 656 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 URGCPQ8TCY9 931 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 PLAGL2Q9UPG8 496 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 NUP210Q8TEM1 1887 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 SCN1AP35498 2009 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 N4BP1O75113 896 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 OAZ2O95190 189 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 THP07101 528 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CCDC192P0DO97 292 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 DSG1Q02413 1049 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 CAMK1Q14012 370 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 ZRSR1Q15695 479 aaKnown RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 FIGNQ5HY92 759 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 KIAA0319Q5VV43 1072 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 JADE1Q6IE81 842 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 GLB1LQ6UWU2 654 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 TOP6BLQ8N6T0 577 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 BCL7CQ8WUZ0 217 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-202ENST00000394943 POMGNT1Q8WZA1 660 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 POLD4Q9HCU8 107 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 PLCB1Q9NQ66 1216 aa7.6□□□□□ -1.19
LIMA1-202ENST00000394943 RBAKQ9NYW8 714 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms